Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters
A new algorithm for the determination of equilibrium structures suitable for metal nanoclusters is proposed. The algorithm performs a stochastic search of the minima associated with the nuclear potential energy function restricted to a sphere (similar to the Thomson problem), in order to guess confi...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2017
- Institución:
- Universidad de Medellín
- Repositorio:
- Repositorio UDEM
- Idioma:
- eng
- OAI Identifier:
- oai:repository.udem.edu.co:11407/4282
- Acceso en línea:
- http://hdl.handle.net/11407/4282
- Palabra clave:
- Potential energy functions
Quantum chemistry
Stochastic systems
Equilibrium structures
Gradient Descent method
Initial configuration
Metal nanoclusters
Molecular quantum chemistry
Nuclear positions
Stochastic search
Valence shell electron pair repulsion
Nanoclusters
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- License
- http://purl.org/coar/access_right/c_16ec
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oai:repository.udem.edu.co:11407/4282 |
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dc.title.spa.fl_str_mv |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
title |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
spellingShingle |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters Potential energy functions Quantum chemistry Stochastic systems Equilibrium structures Gradient Descent method Initial configuration Metal nanoclusters Molecular quantum chemistry Nuclear positions Stochastic search Valence shell electron pair repulsion Nanoclusters |
title_short |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
title_full |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
title_fullStr |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
title_full_unstemmed |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
title_sort |
Algorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclusters |
dc.contributor.affiliation.spa.fl_str_mv |
Arias, E., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia Florez, E., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia Pérez-Torres, J.F., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia, Escuela de Qumica, Universidad Industrial de Santander, Bucaramanga, Colombia |
dc.subject.keyword.eng.fl_str_mv |
Potential energy functions Quantum chemistry Stochastic systems Equilibrium structures Gradient Descent method Initial configuration Metal nanoclusters Molecular quantum chemistry Nuclear positions Stochastic search Valence shell electron pair repulsion Nanoclusters |
topic |
Potential energy functions Quantum chemistry Stochastic systems Equilibrium structures Gradient Descent method Initial configuration Metal nanoclusters Molecular quantum chemistry Nuclear positions Stochastic search Valence shell electron pair repulsion Nanoclusters |
description |
A new algorithm for the determination of equilibrium structures suitable for metal nanoclusters is proposed. The algorithm performs a stochastic search of the minima associated with the nuclear potential energy function restricted to a sphere (similar to the Thomson problem), in order to guess configurations of the nuclear positions. Subsequently, the guessed configurations are further optimized driven by the total energy function using the conventional gradient descent method. This methodology is equivalent to using the valence shell electron pair repulsion model in guessing initial configurations in the traditional molecular quantum chemistry. The framework is illustrated in several clusters of increasing complexity: Cu7, Cu9, and Cu11 as benchmark systems, and Cu38 and Ni9 as novel systems. New equilibrium structures for Cu9, Cu11, Cu38, and Ni9 are reported. © 2017 Author(s). |
publishDate |
2017 |
dc.date.accessioned.none.fl_str_mv |
2017-12-19T19:36:44Z |
dc.date.available.none.fl_str_mv |
2017-12-19T19:36:44Z |
dc.date.created.none.fl_str_mv |
2017 |
dc.type.eng.fl_str_mv |
Article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.driver.none.fl_str_mv |
info:eu-repo/semantics/article |
dc.identifier.issn.none.fl_str_mv |
219606 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/11407/4282 |
dc.identifier.doi.none.fl_str_mv |
10.1063/1.4984049 |
dc.identifier.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional Universidad de Medellín |
dc.identifier.instname.spa.fl_str_mv |
instname:Universidad de Medellín |
identifier_str_mv |
219606 10.1063/1.4984049 reponame:Repositorio Institucional Universidad de Medellín instname:Universidad de Medellín |
url |
http://hdl.handle.net/11407/4282 |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.relation.isversionof.spa.fl_str_mv |
https://www.scopus.com/inward/record.uri?eid=2-s2.0-85021646266&doi=10.1063%2f1.4984049&partnerID=40&md5=94f83345cd96396ea9a0d8ae262a6bf4 |
dc.relation.ispartofes.spa.fl_str_mv |
Journal of Chemical Physics Journal of Chemical Physics Volume 146, Issue 24, 28 June 2017 |
dc.relation.references.spa.fl_str_mv |
Apsel, S. E., Emmert, J. W., Deng, J., & Bloomfield, L. A. (1996). Surface-enhanced magnetism in nickel clusters. Physical Review Letters, 76(9), 1441-1444. doi:10.1103/PhysRevLett.76.1441 Assadollahzadeh, B., Bunker, P. R., & Schwerdtfeger, P. (2008). The low lying isomers of the copper nonamer cluster, Cu9. Chemical Physics Letters, 451(4-6), 262-269. doi:10.1016/j.cplett.2007.12.024 Barrón, C., Gómez, S., Romero, D., & Saavedra, A. (1999). A genetic algorithm for lennard-jones atomic clusters. Applied Mathematics Letters, 12(7), 85-90. Cai, W., Feng, Y., Shao, X., & Pan, Z. (2002). Optimization of lennard-jones atomic clusters. Journal of Molecular Structure: THEOCHEM, 579, 229-234. doi:10.1016/S0166-1280(01)00730-8 Calaminici, P., Köster, A. M., & Gómez-Sandoval, Z. (2007). Density functional study of the structure and properties of Cu9 and Cu9-. Journal of Chemical Theory and Computation, 3(3), 905-913. doi:10.1021/ct600358a Calaminici, P., Pérez-Romero, M., Vásquez-Pérez, J. M., & Köster, A. M. (2013). On the ground state structure of neutral cun (n=12,14,16,18,20) clusters. Computational and Theoretical Chemistry, 1021, 41-48. doi:10.1016/j.comptc.2013.06.014 Chaves, A. S., Rondina, G. G., Piotrowski, M. J., Tereshchuk, P., & Da Silva, J. L. F. (2014). The role of charge states in the atomic structure of cun and ptn (n = 2-14 atoms) clusters: A DFT investigation. Journal of Physical Chemistry A, 118(45), 10813-10821. doi:10.1021/jp508220h Császár, A. G., Fábri, C., Szidarovszky, T., Mátyus, E., Furtenbacher, T., & Czakó, G. (2012). The fourth age of quantum chemistry: Molecules in motion. Physical Chemistry Chemical Physics, 14(3), 1085-1106. doi:10.1039/c1cp21830a Doye, J. P. K., & Wales, D. J. (1998). Global minima for transition metal clusters described by sutton-chen potentials. New Journal of Chemistry, 22(7), 733-744. Doye, J. P. K., Wales, D. J., & Berry, R. S. (1995). The effect of the range of the potential on the structures of clusters. The Journal of Chemical Physics, 103(10), 4234-4249. Ferraro, F., Pérez-Torres, J. F., & Hadad, C. Z. (2015). Selective catalytic activation of acetylene by a neutral gold cluster of experimentally known gas-phase geometry. Journal of Physical Chemistry C, 119(14), 7755-7764. doi:10.1021/jp512989q Geudtner, G., Domínguez-Soria, V. D., Calaminici, P., & Köster, A. M. (2015). Molecular graphs of lin, nan and cun (n=6-9) clusters from the density and the molecular electrostatic potential. Computational and Theoretical Chemistry, 1053, 337-342. doi:10.1016/j.comptc.2014.07.021 Gillespie, R. J. (2008). Fifty years of the VSEPR model. Coordination Chemistry Reviews, 252(12-14), 1315-1327. doi:10.1016/j.ccr.2007.07.007 Gillespie, R. J. (1970). The electron-pair repulsion model for molecular geometry. Journal of Chemical Education, 47(1), 18-23. Gillespie, R. J., & Nyholm, R. S. (1957). Inorganic stereochemistry. Quarterly Reviews, Chemical Society, 11(4), 339-380. Goldberg, D. E. (1989). Genetic Algorithms in Search, Optimization and Machine Learning. Gruene, P., Rayner, D. M., Redlich, B., Van Der Meer, A. F. G., Lyon, J. T., Meijer, G., & Fielicke, A. (2008). Structures of neutral Au7, Au19, and Au20 clusters in the gas phase. Science, 321(5889), 674-676. doi:10.1126/science.1161166 Guan, G., Liu, S., Cai, Y., Low, M., Bharathi, M. S., Zhang, S., . . . Han, M. -. (2014). Destabilization of gold clusters for controlled nanosynthesis: From clusters to polyhedra. Advanced Materials, 26(21), 3427-3432. doi:10.1002/adma.201306167 Gupta, R. P. (1981). Lattice relaxation at a metal surface. Physical Review B, 23(12), 6265-6270. doi:10.1103/PhysRevB.23.6265 Guzmán-Ramírez, G., Aguilera-Granja, F., & Robles, J. (2010). DFT and GEGA genetic algorithm optimized structures of cun ν (ν=±1,0,2; N=3-13) clusters. European Physical Journal D, 57(1), 49-60. doi:10.1140/epjd/e2010-00001-4 Jin, M., Hao, G., Sun, X., & Chen, W. (2012). Nanoparticle-based positron emission tomography and single photon emission computed tomography imaging of cancer. Rev.Nanosci.Nanotechnol. 1. Jin, R., Zeng, C., Zhou, M., & Chen, Y. (2016). Atomically precise colloidal metal nanoclusters and nanoparticles: Fundamentals and opportunities. Chemical Reviews, 116(18), 10346-10413. doi:10.1021/acs.chemrev.5b00703 Jug, K., Zimmermann, B., Calaminici, P., & Köster, A. M. (2002). Structure and stability of small copper clusters. Journal of Chemical Physics, 116(11), 4497-4507. doi:10.1063/1.1436465 Kabir, M., Mookerjee, A., & Bhattacharya, A. K. (2004). Structure and stability of copper clusters: A tight-binding molecular dynamics study. Physical Review A - Atomic, Molecular, and Optical Physics, 69(4), 043203-1-043203-10. doi:10.1103/PhysRevA.69.043203 Lewis, G. N. (1916). The atom and the molecule. Journal of the American Chemical Society, 38(4), 762-785. doi:10.1021/ja02261a002 Luo, C. (2000). Structure of small nickel clusters: Ni2-Ni19. Modelling and Simulation in Materials Science and Engineering, 8(2), 95-102. doi:10.1088/0965-0393/8/2/301 Mátyus, E., Hutter, J., Müller-Herold, U., & Reiher, M. (2011). Extracting elements of molecular structure from the all-particle wave function. Journal of Chemical Physics, 135(20) doi:10.1063/1.3662487 Mátyus, E., Hutter, J., Müller-Herold, U., & Reiher, M. (2011). On the emergence of molecular structure. Physical Review A - Atomic, Molecular, and Optical Physics, 83(5) doi:10.1103/PhysRevA.83.052512 Mátyus, E., & Reiher, M. (2012). Molecular structure calculations: A unified quantum mechanical description of electrons and nuclei using explicitly correlated gaussian functions and the global vector representation. Journal of Chemical Physics, 137(2) doi:10.1063/1.4731696 Mehta, D., Chen, J., Chen, D. Z., Kusumaatmaja, H., & Wales, D. J. (2016). Kinetic transition networks for the thomson problem and smale's seventh problem. Physical Review Letters, 117(2) doi:10.1103/PhysRevLett.117.028301 Mehta, D., Chen, T., Hauenstein, J. D., & Wales, D. J. (2014). Communication: Newton homotopies for sampling stationary points of potential energy landscapes. Journal of Chemical Physics, 141(12) doi:10.1063/1.4896657 Mehta, D., Chen, T., Morgan, J. W. R., & Wales, D. J. (2015). Exploring the potential energy landscape of the thomson problem via newton homotopies. Journal of Chemical Physics, 142(19) doi:10.1063/1.4921163 Mitchell, M. (1996). An Introduction to Genetic Algorithms. Mitzinger, S., Broeckaert, L., Massa, W., Weigend, F., & Dehnen, S. (2016). Understanding of multimetallic cluster growth. Nature Communications, 7 doi:10.1038/ncomms10480 Parks, E. K., Zhu, L., Ho, J., & Riley, S. J. (1994). The structure of small nickel clusters. I. Ni3-Ni15. The Journal of Chemical Physics, 100(10), 7206-7222. Perdew, J. P., Burke, K., & Ernzerhof, M. (1996). Generalized gradient approximation made simple. Physical Review Letters, 77(18), 3865-3868. doi:10.1103/PhysRevLett.77.3865 Péreza, J. F., Florez, E., Hadad, C. Z., Fuentealba, P., & Restrepo, A. (2008). Stochastic search of the quantum conformational space of small lithium and bimetallic lithium-sodium clusters. Journal of Physical Chemistry A, 112(25), 5749-5755. doi:10.1021/jp802176w Pillardy, J., Liwo, A., & Scheraga, H. A. (1999). An efficient deformation-based global optimization method (self-consistent basin-to-deformed-basin mapping (SCBDBM)). Application to lennard-jones atomic clusters. Journal of Physical Chemistry A, 103(46), 9370-9377. Rakhmanov, E. A., Saff, E. B., & Zhou, Y. M. (1995). Computational Methods and Function Theory 1994 (Penang), 293-309. Rastogi, S. K., Denn, B. D., & Branen, A. L. (2012). Synthesis of highly fluorescent and thio-linkers stabilize gold quantum dots and nano clusters in DMF for bio-labeling. Journal of Nanoparticle Research, 14(1) doi:10.1007/s11051-011-0673-8 Schebarchov, D., & Wales, D. J. (2015). Quasi-combinatorial energy landscapes for nanoalloy structure optimisation. Physical Chemistry Chemical Physics, 17(42), 28331-28338. doi:10.1039/c5cp01198a Smale, S. (1998). Mathematical problems for the next century. Mathematical Intelligencer, 20(2), 7-15. Soler, J. M., Artacho, E., Gale, J. D., García, A., Junquera, J., Ordejón, P., & Sánchez-Portal, D. (2002). The SIESTA method for ab initio order-N materials simulation. Journal of Physics Condensed Matter, 14(11), 2745-2779. doi:10.1088/0953-8984/14/11/302 Sperling, G. (1960). Lösung einer elementargeometrischen frage von FEJES TÒTH. Archiv Der Mathematik, 11(1), 69-71. doi:10.1007/BF01236910 Stephen Berry, R. (1960). Correlation of rates of intramolecular tunneling processes, with application to some group V compounds. The Journal of Chemical Physics, 32(3), 933-938. Stewart, J. J. P. (2007). Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements. Journal of Molecular Modeling, 13(12), 1173-1213. doi:10.1007/s00894-007-0233-4 Szabó, I., Fábri, C., Czakó, G., Mátyus, E., & Császár, A. G. (2012). Temperature-dependent, effective structures of the 14NH 3 and 14ND 3 molecules. Journal of Physical Chemistry A, 116(17), 4356-4362. doi:10.1021/jp211802y Thomson, J. J. (1904). On the structure of the atom. Philos.Mag., 7(39), 237-265. Tóth, L. F. (1959). Über eine punktverteilung auf der kugel. Acta Mathematica Academiae Scientiarum Hungaricae, 10(1-2), 13-19. doi:10.1007/BF02063286 Tsuchida, R. (1939). New simple valency theory. J.Chem.Soc.Jpn.(in Japanese), 60, 245-256. Wales, D. J., & Doye, J. P. K. (1997). Global optimization by basin-hopping and the lowest energy structures of lennard-jones clusters containing up to 110 atoms. Journal of Physical Chemistry A, 101(28), 5111-5116. doi:10.1021/jp970984n Wales, D. J., Doye, J. P. K., Dullweber, A., Hodges, M. P., Calvo, F. Y. N. F., Hernández-Rojas, J., & Middleton, T. F. (2016). The Cambridge Energy Landscape Database. Wales, D. J., & Scheraga, H. A. (1999). Global optimization of clusters, crystals, and biomolecules. Science, 285(5432), 1368-1372. doi:10.1126/science.285.5432.1368 Zhang, J., & Dolg, M. (2015). ABCluster: The artificial bee colony algorithm for cluster global optimization. Physical Chemistry Chemical Physics, 17(37), 24173-24181. doi:10.1039/c5cp04060d |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_16ec |
rights_invalid_str_mv |
http://purl.org/coar/access_right/c_16ec |
dc.publisher.spa.fl_str_mv |
American Institute of Physics Inc. |
dc.publisher.faculty.spa.fl_str_mv |
Facultad de Ciencias Básicas |
dc.source.spa.fl_str_mv |
Scopus |
institution |
Universidad de Medellín |
repository.name.fl_str_mv |
Repositorio Institucional Universidad de Medellin |
repository.mail.fl_str_mv |
repositorio@udem.edu.co |
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1814159157185478656 |
spelling |
2017-12-19T19:36:44Z2017-12-19T19:36:44Z2017219606http://hdl.handle.net/11407/428210.1063/1.4984049reponame:Repositorio Institucional Universidad de Medellíninstname:Universidad de MedellínA new algorithm for the determination of equilibrium structures suitable for metal nanoclusters is proposed. The algorithm performs a stochastic search of the minima associated with the nuclear potential energy function restricted to a sphere (similar to the Thomson problem), in order to guess configurations of the nuclear positions. Subsequently, the guessed configurations are further optimized driven by the total energy function using the conventional gradient descent method. This methodology is equivalent to using the valence shell electron pair repulsion model in guessing initial configurations in the traditional molecular quantum chemistry. The framework is illustrated in several clusters of increasing complexity: Cu7, Cu9, and Cu11 as benchmark systems, and Cu38 and Ni9 as novel systems. New equilibrium structures for Cu9, Cu11, Cu38, and Ni9 are reported. © 2017 Author(s).engAmerican Institute of Physics Inc.Facultad de Ciencias Básicashttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85021646266&doi=10.1063%2f1.4984049&partnerID=40&md5=94f83345cd96396ea9a0d8ae262a6bf4Journal of Chemical PhysicsJournal of Chemical Physics Volume 146, Issue 24, 28 June 2017Apsel, S. E., Emmert, J. W., Deng, J., & Bloomfield, L. A. (1996). Surface-enhanced magnetism in nickel clusters. Physical Review Letters, 76(9), 1441-1444. doi:10.1103/PhysRevLett.76.1441Assadollahzadeh, B., Bunker, P. R., & Schwerdtfeger, P. (2008). The low lying isomers of the copper nonamer cluster, Cu9. Chemical Physics Letters, 451(4-6), 262-269. doi:10.1016/j.cplett.2007.12.024Barrón, C., Gómez, S., Romero, D., & Saavedra, A. (1999). A genetic algorithm for lennard-jones atomic clusters. Applied Mathematics Letters, 12(7), 85-90.Cai, W., Feng, Y., Shao, X., & Pan, Z. (2002). Optimization of lennard-jones atomic clusters. Journal of Molecular Structure: THEOCHEM, 579, 229-234. doi:10.1016/S0166-1280(01)00730-8Calaminici, P., Köster, A. M., & Gómez-Sandoval, Z. (2007). Density functional study of the structure and properties of Cu9 and Cu9-. Journal of Chemical Theory and Computation, 3(3), 905-913. doi:10.1021/ct600358aCalaminici, P., Pérez-Romero, M., Vásquez-Pérez, J. M., & Köster, A. M. (2013). On the ground state structure of neutral cun (n=12,14,16,18,20) clusters. Computational and Theoretical Chemistry, 1021, 41-48. doi:10.1016/j.comptc.2013.06.014Chaves, A. S., Rondina, G. G., Piotrowski, M. J., Tereshchuk, P., & Da Silva, J. L. F. (2014). The role of charge states in the atomic structure of cun and ptn (n = 2-14 atoms) clusters: A DFT investigation. Journal of Physical Chemistry A, 118(45), 10813-10821. doi:10.1021/jp508220hCsászár, A. G., Fábri, C., Szidarovszky, T., Mátyus, E., Furtenbacher, T., & Czakó, G. (2012). The fourth age of quantum chemistry: Molecules in motion. Physical Chemistry Chemical Physics, 14(3), 1085-1106. doi:10.1039/c1cp21830aDoye, J. P. K., & Wales, D. J. (1998). Global minima for transition metal clusters described by sutton-chen potentials. New Journal of Chemistry, 22(7), 733-744.Doye, J. P. K., Wales, D. J., & Berry, R. S. (1995). The effect of the range of the potential on the structures of clusters. The Journal of Chemical Physics, 103(10), 4234-4249.Ferraro, F., Pérez-Torres, J. F., & Hadad, C. Z. (2015). Selective catalytic activation of acetylene by a neutral gold cluster of experimentally known gas-phase geometry. Journal of Physical Chemistry C, 119(14), 7755-7764. doi:10.1021/jp512989qGeudtner, G., Domínguez-Soria, V. D., Calaminici, P., & Köster, A. M. (2015). Molecular graphs of lin, nan and cun (n=6-9) clusters from the density and the molecular electrostatic potential. Computational and Theoretical Chemistry, 1053, 337-342. doi:10.1016/j.comptc.2014.07.021Gillespie, R. J. (2008). Fifty years of the VSEPR model. Coordination Chemistry Reviews, 252(12-14), 1315-1327. doi:10.1016/j.ccr.2007.07.007Gillespie, R. J. (1970). The electron-pair repulsion model for molecular geometry. Journal of Chemical Education, 47(1), 18-23.Gillespie, R. J., & Nyholm, R. S. (1957). Inorganic stereochemistry. Quarterly Reviews, Chemical Society, 11(4), 339-380.Goldberg, D. E. (1989). Genetic Algorithms in Search, Optimization and Machine Learning.Gruene, P., Rayner, D. M., Redlich, B., Van Der Meer, A. F. G., Lyon, J. T., Meijer, G., & Fielicke, A. (2008). Structures of neutral Au7, Au19, and Au20 clusters in the gas phase. Science, 321(5889), 674-676. doi:10.1126/science.1161166Guan, G., Liu, S., Cai, Y., Low, M., Bharathi, M. S., Zhang, S., . . . Han, M. -. (2014). Destabilization of gold clusters for controlled nanosynthesis: From clusters to polyhedra. Advanced Materials, 26(21), 3427-3432. doi:10.1002/adma.201306167Gupta, R. P. (1981). Lattice relaxation at a metal surface. Physical Review B, 23(12), 6265-6270. doi:10.1103/PhysRevB.23.6265Guzmán-Ramírez, G., Aguilera-Granja, F., & Robles, J. (2010). DFT and GEGA genetic algorithm optimized structures of cun ν (ν=±1,0,2; N=3-13) clusters. European Physical Journal D, 57(1), 49-60. doi:10.1140/epjd/e2010-00001-4Jin, M., Hao, G., Sun, X., & Chen, W. (2012). Nanoparticle-based positron emission tomography and single photon emission computed tomography imaging of cancer. Rev.Nanosci.Nanotechnol. 1.Jin, R., Zeng, C., Zhou, M., & Chen, Y. (2016). Atomically precise colloidal metal nanoclusters and nanoparticles: Fundamentals and opportunities. Chemical Reviews, 116(18), 10346-10413. doi:10.1021/acs.chemrev.5b00703Jug, K., Zimmermann, B., Calaminici, P., & Köster, A. M. (2002). Structure and stability of small copper clusters. Journal of Chemical Physics, 116(11), 4497-4507. doi:10.1063/1.1436465Kabir, M., Mookerjee, A., & Bhattacharya, A. K. (2004). Structure and stability of copper clusters: A tight-binding molecular dynamics study. Physical Review A - Atomic, Molecular, and Optical Physics, 69(4), 043203-1-043203-10. doi:10.1103/PhysRevA.69.043203Lewis, G. N. (1916). The atom and the molecule. Journal of the American Chemical Society, 38(4), 762-785. doi:10.1021/ja02261a002Luo, C. (2000). Structure of small nickel clusters: Ni2-Ni19. Modelling and Simulation in Materials Science and Engineering, 8(2), 95-102. doi:10.1088/0965-0393/8/2/301Mátyus, E., Hutter, J., Müller-Herold, U., & Reiher, M. (2011). Extracting elements of molecular structure from the all-particle wave function. Journal of Chemical Physics, 135(20) doi:10.1063/1.3662487Mátyus, E., Hutter, J., Müller-Herold, U., & Reiher, M. (2011). On the emergence of molecular structure. Physical Review A - Atomic, Molecular, and Optical Physics, 83(5) doi:10.1103/PhysRevA.83.052512Mátyus, E., & Reiher, M. (2012). Molecular structure calculations: A unified quantum mechanical description of electrons and nuclei using explicitly correlated gaussian functions and the global vector representation. Journal of Chemical Physics, 137(2) doi:10.1063/1.4731696Mehta, D., Chen, J., Chen, D. Z., Kusumaatmaja, H., & Wales, D. J. (2016). Kinetic transition networks for the thomson problem and smale's seventh problem. Physical Review Letters, 117(2) doi:10.1103/PhysRevLett.117.028301Mehta, D., Chen, T., Hauenstein, J. D., & Wales, D. J. (2014). Communication: Newton homotopies for sampling stationary points of potential energy landscapes. Journal of Chemical Physics, 141(12) doi:10.1063/1.4896657Mehta, D., Chen, T., Morgan, J. W. R., & Wales, D. J. (2015). Exploring the potential energy landscape of the thomson problem via newton homotopies. Journal of Chemical Physics, 142(19) doi:10.1063/1.4921163Mitchell, M. (1996). An Introduction to Genetic Algorithms.Mitzinger, S., Broeckaert, L., Massa, W., Weigend, F., & Dehnen, S. (2016). Understanding of multimetallic cluster growth. Nature Communications, 7 doi:10.1038/ncomms10480Parks, E. K., Zhu, L., Ho, J., & Riley, S. J. (1994). The structure of small nickel clusters. I. Ni3-Ni15. The Journal of Chemical Physics, 100(10), 7206-7222.Perdew, J. P., Burke, K., & Ernzerhof, M. (1996). Generalized gradient approximation made simple. Physical Review Letters, 77(18), 3865-3868. doi:10.1103/PhysRevLett.77.3865Péreza, J. F., Florez, E., Hadad, C. Z., Fuentealba, P., & Restrepo, A. (2008). Stochastic search of the quantum conformational space of small lithium and bimetallic lithium-sodium clusters. Journal of Physical Chemistry A, 112(25), 5749-5755. doi:10.1021/jp802176wPillardy, J., Liwo, A., & Scheraga, H. A. (1999). 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Physical Chemistry Chemical Physics, 17(37), 24173-24181. doi:10.1039/c5cp04060dScopusAlgorithm based on the Thomson problem for determination of equilibrium structures of metal nanoclustersArticleinfo:eu-repo/semantics/articlehttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1Arias, E., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, ColombiaFlorez, E., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, ColombiaPérez-Torres, J.F., Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia, Escuela de Qumica, Universidad Industrial de Santander, Bucaramanga, ColombiaArias E.Florez E.Pérez-Torres J.F.Facultad de Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, ColombiaEscuela de Qumica, Universidad Industrial de Santander, Bucaramanga, ColombiaPotential energy functionsQuantum chemistryStochastic systemsEquilibrium structuresGradient Descent methodInitial configurationMetal nanoclustersMolecular quantum chemistryNuclear positionsStochastic searchValence shell electron pair repulsionNanoclustersA new algorithm for the determination of equilibrium structures suitable for metal nanoclusters is proposed. The algorithm performs a stochastic search of the minima associated with the nuclear potential energy function restricted to a sphere (similar to the Thomson problem), in order to guess configurations of the nuclear positions. Subsequently, the guessed configurations are further optimized driven by the total energy function using the conventional gradient descent method. This methodology is equivalent to using the valence shell electron pair repulsion model in guessing initial configurations in the traditional molecular quantum chemistry. The framework is illustrated in several clusters of increasing complexity: Cu7, Cu9, and Cu11 as benchmark systems, and Cu38 and Ni9 as novel systems. New equilibrium structures for Cu9, Cu11, Cu38, and Ni9 are reported. © 2017 Author(s).http://purl.org/coar/access_right/c_16ec11407/4282oai:repository.udem.edu.co:11407/42822020-05-27 16:36:46.087Repositorio Institucional Universidad de Medellinrepositorio@udem.edu.co |