Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions

In animal production, probiotics seek to replace the use of antibiotics, while diminishing mortality and morbidity rates to raise productivity. Probiotics constitute a natural alternative that, in contrast with antibiotics, neither produces pathogen resistance, nor leaves chemical residues in the fi...

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Autores:
Robledo Cardona, Simón
Ramírez Hincapié, Sabina
Correa Álvarez, Javier
Tipo de recurso:
Fecha de publicación:
2018
Institución:
Universidad EAFIT
Repositorio:
Repositorio EAFIT
Idioma:
eng
OAI Identifier:
oai:repository.eafit.edu.co:10784/14369
Acceso en línea:
http://hdl.handle.net/10784/14369
Palabra clave:
Bioprospecting
Probiotics
Lactic Acid Bacteria (Lab)
Antagonism Test
Bioprospección
Probióticos
Bacterias Ácido Lácticas
Prueba De Antagonismo
Rights
License
Copyright (c) 2018 Simón Robledo Cardona, Sabina Ramírez Hincapié, Javier Correa Álvarez
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dc.title.eng.fl_str_mv Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
dc.title.spa.fl_str_mv Implementación de un protocolo de bioprospección no invasivo para el aislamiento de Lactobacillus a partir de heces de gallinas en condiciones de forrajeo
title Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
spellingShingle Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
Bioprospecting
Probiotics
Lactic Acid Bacteria (Lab)
Antagonism Test
Bioprospección
Probióticos
Bacterias Ácido Lácticas
Prueba De Antagonismo
title_short Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
title_full Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
title_fullStr Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
title_full_unstemmed Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
title_sort Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging Conditions
dc.creator.fl_str_mv Robledo Cardona, Simón
Ramírez Hincapié, Sabina
Correa Álvarez, Javier
dc.contributor.author.spa.fl_str_mv Robledo Cardona, Simón
Ramírez Hincapié, Sabina
Correa Álvarez, Javier
dc.contributor.affiliation.spa.fl_str_mv Universidad EAFIT
dc.subject.keyword.eng.fl_str_mv Bioprospecting
Probiotics
Lactic Acid Bacteria (Lab)
Antagonism Test
topic Bioprospecting
Probiotics
Lactic Acid Bacteria (Lab)
Antagonism Test
Bioprospección
Probióticos
Bacterias Ácido Lácticas
Prueba De Antagonismo
dc.subject.keyword.spa.fl_str_mv Bioprospección
Probióticos
Bacterias Ácido Lácticas
Prueba De Antagonismo
description In animal production, probiotics seek to replace the use of antibiotics, while diminishing mortality and morbidity rates to raise productivity. Probiotics constitute a natural alternative that, in contrast with antibiotics, neither produces pathogen resistance, nor leaves chemical residues in the final product. Several bacteria, including some belonging to the genus Lactobacillus have been described as probiotics with high potential. A non-invasive bioprospecting protocol aimed for the isolation and characterization of lactobacilli from chicken feces was established. Fecal samples were collected from the ground. These were diluted and cultured in LAB selective medium. Colonies were identified by three methods: Gram stain, MALDI-TOF MS and sequencing of 16S rRNA gene. An initial probiotic potential of lactobacilli isolates was determined via antagonism tests using five enteropathogen reference strains: Staphylococcus aureus, Enterococcus faecium, Candida albicans, Pseudomonas spp. and Salmonella spp. 24 isolates belonging to four Lactobacillus species were identified by MALDITOF MS. BLAST of 16S rRNA gene of eight randomly selected isolates, confirmed MALDI-TOF MS identification. Five of these eight isolates inhibited the growth of at least one of the pathogenic strains used, three isolates of Lactobacillus plantarum and two of Lactobacillus salivarius. Our protocol achieved 21 lactobacilli per 100 isolates performance, greatly surpassing the normal percentage of lactobacilli in chicken gut microbiome, that so, its implementation would facilitate the isolation and identification of new probiotic strains from feces.
publishDate 2018
dc.date.issued.none.fl_str_mv 2018-11-23
dc.date.available.none.fl_str_mv 2019-11-22T16:02:24Z
dc.date.accessioned.none.fl_str_mv 2019-11-22T16:02:24Z
dc.date.none.fl_str_mv 2018-11-23
dc.type.eng.fl_str_mv article
info:eu-repo/semantics/article
publishedVersion
info:eu-repo/semantics/publishedVersion
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dc.type.local.spa.fl_str_mv Artículo
status_str publishedVersion
dc.identifier.issn.none.fl_str_mv 2256-4314
1794-9165
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10784/14369
dc.identifier.doi.none.fl_str_mv 10.17230/ingciencia.14.28.4
identifier_str_mv 2256-4314
1794-9165
10.17230/ingciencia.14.28.4
url http://hdl.handle.net/10784/14369
dc.language.iso.eng.fl_str_mv eng
language eng
dc.relation.isversionof.none.fl_str_mv http://publicaciones.eafit.edu.co/index.php/ingciencia/article/view/5106
dc.relation.uri.none.fl_str_mv http://publicaciones.eafit.edu.co/index.php/ingciencia/article/view/5106
dc.rights.eng.fl_str_mv Copyright (c) 2018 Simón Robledo Cardona, Sabina Ramírez Hincapié, Javier Correa Álvarez
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.local.spa.fl_str_mv Acceso abierto
rights_invalid_str_mv Copyright (c) 2018 Simón Robledo Cardona, Sabina Ramírez Hincapié, Javier Correa Álvarez
Acceso abierto
http://purl.org/coar/access_right/c_abf2
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dc.coverage.spatial.eng.fl_str_mv Medellín de: Lat: 06 15 00 N degrees minutes Lat: 6.2500 decimal degrees Long: 075 36 00 W degrees minutes Long: -75.6000 decimal degrees
dc.publisher.spa.fl_str_mv Universidad EAFIT
dc.source.none.fl_str_mv instname:Universidad EAFIT
reponame:Repositorio Institucional Universidad EAFIT
dc.source.spa.fl_str_mv Ingeniería y Ciencia; Vol 14, No 28 (2018)
instname_str Universidad EAFIT
institution Universidad EAFIT
reponame_str Repositorio Institucional Universidad EAFIT
collection Repositorio Institucional Universidad EAFIT
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spelling Medellín de: Lat: 06 15 00 N degrees minutes Lat: 6.2500 decimal degrees Long: 075 36 00 W degrees minutes Long: -75.6000 decimal degrees2018-11-232019-11-22T16:02:24Z2018-11-232019-11-22T16:02:24Z2256-43141794-9165http://hdl.handle.net/10784/1436910.17230/ingciencia.14.28.4In animal production, probiotics seek to replace the use of antibiotics, while diminishing mortality and morbidity rates to raise productivity. Probiotics constitute a natural alternative that, in contrast with antibiotics, neither produces pathogen resistance, nor leaves chemical residues in the final product. Several bacteria, including some belonging to the genus Lactobacillus have been described as probiotics with high potential. A non-invasive bioprospecting protocol aimed for the isolation and characterization of lactobacilli from chicken feces was established. Fecal samples were collected from the ground. These were diluted and cultured in LAB selective medium. Colonies were identified by three methods: Gram stain, MALDI-TOF MS and sequencing of 16S rRNA gene. An initial probiotic potential of lactobacilli isolates was determined via antagonism tests using five enteropathogen reference strains: Staphylococcus aureus, Enterococcus faecium, Candida albicans, Pseudomonas spp. and Salmonella spp. 24 isolates belonging to four Lactobacillus species were identified by MALDITOF MS. BLAST of 16S rRNA gene of eight randomly selected isolates, confirmed MALDI-TOF MS identification. Five of these eight isolates inhibited the growth of at least one of the pathogenic strains used, three isolates of Lactobacillus plantarum and two of Lactobacillus salivarius. Our protocol achieved 21 lactobacilli per 100 isolates performance, greatly surpassing the normal percentage of lactobacilli in chicken gut microbiome, that so, its implementation would facilitate the isolation and identification of new probiotic strains from feces.En la producción animal, los probióticos son una alternativa para reemplazar el uso de antibióticos, ya que disminuyen las tasas de morbilidad y mortalidad, aumentando al mismo tiempo la productividad. Así mismo, los probióticos constituyen una alternativa natural que, en contraste con los antibióticos, no generan patógenos resistentes ni dejan residuos químicos en el producto final. Una variedad de bacterias, pertenecientes al género Lactobacillus, han sido descritas como probióticos con alto potencial. Se estableció un protocolo de bioprospección no invasivo dirigido al aislamiento y caracterización de lactobacilos a partir de heces de gallinas. Las muestras fecales fueron colectadas a partir del suelo. Luego fueron diluidas y sembradas en medio selectivo para bacterias ácido lácticas MRS. Las colonias fueron identificadas por tres métodos: tinción de Gram, MALDI-TOF MS y secuenciamiento del gen ARNr 16s. Para caracterizar inicialmente el potencial probiótico de ocho de los aislados de lactobacilos obtenidos se realizaron pruebas de antagonismo usando cinco cepas referencia de patógenos: Staphylococcus aureus, Enterococcus faecium, Candida albicans, Pseudomonas spp. y Salmonella spp. 24 aislados distribuidos en cuatro especies de Lactobacillus fueron identificadas por MALDI-TOF MS. La identificación por MALDI-TOF MS fue confirmada mediante el secuenciamiento del gen ARNr 16s de ocho aislados seleccionados aleatoriamente. Cinco aislados, tres identificados como Lactobacillus plantarum y dos como Lactobacillus salivarius, inhibieron el crecimiento de al menos uno de los patógenos seleccionados. El protocolo logró un desempeño de 21 lactobacilos por 100 aislados, superando con creces la representación normal de los lacobacilos en el microbioma gastrointestinal de las gallinas, de manera que su implementación facilitaría los esfuerzos de aislamiento e identificación de nuevas cepas probióticas a partir de heces.application/pdfengUniversidad EAFIThttp://publicaciones.eafit.edu.co/index.php/ingciencia/article/view/5106http://publicaciones.eafit.edu.co/index.php/ingciencia/article/view/5106Copyright (c) 2018 Simón Robledo Cardona, Sabina Ramírez Hincapié, Javier Correa ÁlvarezAcceso abiertohttp://purl.org/coar/access_right/c_abf2instname:Universidad EAFITreponame:Repositorio Institucional Universidad EAFITIngeniería y Ciencia; Vol 14, No 28 (2018)Implementation of a Non-Invasive Bioprospecting Protocol for Isolation of Lactobacillus from Feces of Hens Under Foraging ConditionsImplementación de un protocolo de bioprospección no invasivo para el aislamiento de Lactobacillus a partir de heces de gallinas en condiciones de forrajeoarticleinfo:eu-repo/semantics/articlepublishedVersioninfo:eu-repo/semantics/publishedVersionArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1BioprospectingProbioticsLactic Acid Bacteria (Lab)Antagonism TestBioprospecciónProbióticosBacterias Ácido LácticasPrueba De AntagonismoRobledo Cardona, Simón0c9a72f2-cacc-4d3e-8885-e5d2e531f871-1Ramírez Hincapié, Sabinac97de601-21ab-4bab-9042-37b7705b9e70-1Correa Álvarez, Javier0cec64c6-32a1-45f0-97fa-1fbe24fcb952-1Universidad EAFITIngeniería y Ciencia142893111ing.cienc.THUMBNAILminaitura-ig_Mesa de trabajo 1.jpgminaitura-ig_Mesa de trabajo 1.jpgimage/jpeg265796https://repository.eafit.edu.co/bitstreams/7ea4fdab-4bfb-4967-bb6e-49d14e8a4b28/downloadda9b21a5c7e00c7f1127cef8e97035e0MD51ORIGINALdocument (4).pdfdocument (4).pdfTexto completo PDFapplication/pdf1220489https://repository.eafit.edu.co/bitstreams/19f211ad-ad06-4dc2-b1d8-7af2ecf2a819/download14220eb5d42f0fd545d290e710462e2aMD52articulo.htmlarticulo.htmlTexto completo HTMLtext/html374https://repository.eafit.edu.co/bitstreams/34843640-42ed-4469-883c-2de6e18cbc7c/downloadabcf8a69bb1359c90f862e8f764a47f1MD5310784/14369oai:repository.eafit.edu.co:10784/143692024-12-04 11:47:30.631open.accesshttps://repository.eafit.edu.coRepositorio Institucional Universidad EAFITrepositorio@eafit.edu.co