Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system
The interaction between three widely used antimalarial drugs chloroquine, primaquine and amodiaquine with acrylamide dimer and trimer as a hydrogel model, were studied by means of density functional theory calculation in both vacuum and water environments, using the functional wb97xd with 6-31++G(d,...
- Autores:
-
Márquez, Edgar
Mora, José R.
Puello, Esneyder
Rangel, Norma
De Moya, Aldemar
Trilleras, Jorge
Cortes, Eliceo
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2019
- Institución:
- Corporación Universidad de la Costa
- Repositorio:
- REDICUC - Repositorio CUC
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.cuc.edu.co:11323/5301
- Acceso en línea:
- https://hdl.handle.net/11323/5301
https://repositorio.cuc.edu.co/
- Palabra clave:
- Plasmodium falciparum
Hydrogen bond
Hydrogel
Computational modeling
Binding energy
Drug-delivery system
- Rights
- openAccess
- License
- http://creativecommons.org/publicdomain/zero/1.0/
id |
RCUC2_b864631dca4613e7d15e4300f1dba33e |
---|---|
oai_identifier_str |
oai:repositorio.cuc.edu.co:11323/5301 |
network_acronym_str |
RCUC2 |
network_name_str |
REDICUC - Repositorio CUC |
repository_id_str |
|
dc.title.spa.fl_str_mv |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
title |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
spellingShingle |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system Plasmodium falciparum Hydrogen bond Hydrogel Computational modeling Binding energy Drug-delivery system |
title_short |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
title_full |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
title_fullStr |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
title_full_unstemmed |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
title_sort |
Theoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery system |
dc.creator.fl_str_mv |
Márquez, Edgar Mora, José R. Puello, Esneyder Rangel, Norma De Moya, Aldemar Trilleras, Jorge Cortes, Eliceo |
dc.contributor.author.spa.fl_str_mv |
Márquez, Edgar Mora, José R. Puello, Esneyder Rangel, Norma De Moya, Aldemar Trilleras, Jorge Cortes, Eliceo |
dc.subject.spa.fl_str_mv |
Plasmodium falciparum Hydrogen bond Hydrogel Computational modeling Binding energy Drug-delivery system |
topic |
Plasmodium falciparum Hydrogen bond Hydrogel Computational modeling Binding energy Drug-delivery system |
description |
The interaction between three widely used antimalarial drugs chloroquine, primaquine and amodiaquine with acrylamide dimer and trimer as a hydrogel model, were studied by means of density functional theory calculation in both vacuum and water environments, using the functional wb97xd with 6-31++G(d,p) basis set and polarizable continuum model (C-PCM) of solvent. According to binding energy, around −3.15 to −11.91 kJ/mol, the interaction between antimalarial compounds and hydrogel model are exothermic in nature. The extent of interaction found is primaquine > amodiaquine > chloroquine. The natural bond orbital (NBO) calculation and application of second-order perturbation theory show strong charge transfer between the antimalarial and hydrogel model. In addition, the results suggest these interactions are polar in nature, where hydrogen bonds play a principal role in stabilization of the complex. Comparing with the gas-phase, the complexes in the water environment are also stable, with suitable values of Log P (Partition coefficient), and dipolar momentum. Consequently, these results encourage to test acrylamide hydrogels as antimalarial delivery systems. |
publishDate |
2019 |
dc.date.accessioned.none.fl_str_mv |
2019-09-25T21:39:31Z |
dc.date.available.none.fl_str_mv |
2019-09-25T21:39:31Z |
dc.date.issued.none.fl_str_mv |
2019-06-12 |
dc.type.spa.fl_str_mv |
Artículo de revista |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.content.spa.fl_str_mv |
Text |
dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ART |
dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/acceptedVersion |
format |
http://purl.org/coar/resource_type/c_6501 |
status_str |
acceptedVersion |
dc.identifier.uri.spa.fl_str_mv |
https://hdl.handle.net/11323/5301 |
dc.identifier.instname.spa.fl_str_mv |
Corporación Universidad de la Costa |
dc.identifier.reponame.spa.fl_str_mv |
REDICUC - Repositorio CUC |
dc.identifier.repourl.spa.fl_str_mv |
https://repositorio.cuc.edu.co/ |
url |
https://hdl.handle.net/11323/5301 https://repositorio.cuc.edu.co/ |
identifier_str_mv |
Corporación Universidad de la Costa REDICUC - Repositorio CUC |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.spa.fl_str_mv |
https://www.raco.cat/index.php/afinidad/article/view/359062 |
dc.relation.references.spa.fl_str_mv |
1. Organisation Mondiale de la Santé. World Malaria Report 2012 WHO Global Malaria Programme; World Health Organization: Geneva, Swizerland, 2012; ISBN 978-92-4-156453-3. 2. Al Qaraghuli, M.M.; Obeid, M.A.; Aldulaimi, O.; Ferro, V.A. Control of malaria by bio-therapeutics and drug delivery systems. J. Med. Microbiol. Diagn. 2017, 6, 260. [CrossRef] 3. Liu, J.; Xiao, Y.; Allen, C. Polymer–drug compatibility: A guide to the development of delivery systems for the anticancer agent, ellipticine. J. Pharm. Sci. 2004, 93, 132–143. [CrossRef] [PubMed] 4. Tang, H.; Zhao, W.; Yu, J.; Li, Y.; Zhao, C. Recent Development of pH-Responsive Polymers for Cancer Nanomedicine. Molecules 2019, 24, 4. [CrossRef] [PubMed] 5. Yang, L.; Sun, H.; Liu, Y.; Hou, W.; Yang, Y.; Cai, R.; Cui, C.; Zhang, P.; Pan, X.; Li, X.; et al. Self-Assembled Aptamer-Grafted Hyperbranched Polymer Nanocarrier for Targeted and Photoresponsive Drug Delivery. Angew. Chem. Int. Ed. 2018, 57, 17048–17052. [CrossRef] [PubMed] 6. Externally Triggered Heat and Drug Release from Magnetically Controlled Nanocarriers|ACS Applied Polymer Materials. Available online: https://pubs.acs.org/doi/pdf/10.1021/acsapm.8b00100 (accessed on 27 May 2019). 7. Murambiwa, P.; Masola, B.; Govender, T.; Mukaratirwa, S.; Musabayane, C.T. Anti-malarial drug formulations and novel delivery systems: A review. Acta Trop. 2011, 118, 71–79. [CrossRef] [PubMed] 8. Ganji, F.; Vasheghani-Farahani, S.; Vasheghani-Farahani, E. Theoretical description of hydrogel swelling: A review. Iran. Polym. J. 2010, 19, 375–398. 9. Huang, Y.; Jin, X.; Liu, H.; Hu, Y. A molecular thermodynamic model for the swelling of thermo-sensitive hydrogels. Fluid Phase Equilibria 2008, 263, 96–101. [CrossRef] 10. Cai, S.; Suo, Z. Mechanics and chemical thermodynamics of phase transition in temperature-sensitive hydrogels. J. Mech. Phys. Solids 2011, 59, 2259–2278. [CrossRef] 11. Du, X.; Zhou, J.; Shi, J.; Xu, B. Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials. Chem. Rev. 2015, 115, 13165–13307. [CrossRef] 12. Huynh, L.; Neale, C.; Pomès, R.; Allen, C. Computational approaches to the rational design of nanoemulsions, polymeric micelles, and dendrimers for drug delivery. Nanomed.: Nanotechnol. Biol. Med. 2012, 8, 20–36. [CrossRef] 13. Shen, E.; Kipper, M.J.; Dziadul, B.; Lim, M.-K.; Narasimhan, B. Mechanistic relationships between polymer microstructure and drug release kinetics in bioerodible polyanhydrides. J. Control. Release 2002, 82, 115–125. [CrossRef] 14. Park, J.; Ye, M.; Park, K. Biodegradable polymers for microencapsulation of drugs. Molecules 2005, 10, 146–161. [CrossRef] [PubMed] 15. Weiss, R.G.; Terech, P. (Eds.) Molecular Gels: Materials with Self-Assembled Fibrillar Networks; Springer: Dordrecht, The Netherlands, 2006; ISBN 978-1-4020-3352-0. 16. Zweep, N.; Hopkinson, A.; Meetsma, A.; Browne, W.R.; Feringa, B.L.; van Esch, J.H. balancing hydrogen bonding and van der waals interactions in cyclohexane-based bisamide and bisurea organogelators. Langmuir 2009, 25, 8802–8809. [CrossRef] [PubMed] 17. Hoy, R.S.; Fredrickson, G.H. Thermoreversible associating polymer networks. I. Interplay of thermodynamics, chemical kinetics, and polymer physics. J. Chem. Phys. 2009, 131, 224902. [CrossRef] [PubMed] 18. Maniruzzaman, M.; Pang, J.; Morgan, D.J.; Douroumis, D. Molecular Modeling as a Predictive Tool for the Development of Solid Dispersions. Available online: https://pubs.acs.org/doi/abs/10.1021/mp500510m (accessed on 3 November 2018). 19. Maniruzzaman, M.; Morgan, D.J.; Mendham, A.P.; Pang, J.; Snowden, M.J.; Douroumis, D. Drug–polymer intermolecular interactions in hot-melt extruded solid dispersions. Int. J. Pharm. 2013, 443, 199–208. [CrossRef] [PubMed] 20. Schmaljohann, D. Thermo- and pH-responsive polymers in drug delivery. Adv. Drug Deliv. Rev. 2006, 58, 1655–1670. [CrossRef] [PubMed] 21. Seiffert, S.; Sprakel, J. Physical chemistry of supramolecular polymer networks. Chem. Soc. Rev. 2012, 41, 909–930. [CrossRef] [PubMed] 22. Tanaka, F. Theoretical Study of Molecular Association and Thermoreversible Gelation in Polymers. Polym. J. 2002, 34, 479–509. [CrossRef] 23. Peppas, N.A.; Huang, Y.; Torres-Lugo, M.; Ward, J.H.; Zhang, J. Physicochemical Foundations and Structural Design of Hydrogels in Medicine and Biology. Annu. Rev. Biomed. Eng. 2000, 2, 9–29. [CrossRef] 24. Chun, B.J.; Lu, J.; Weck, M.; Jang, S.S. Characterization of molecular association of poly(2-oxazoline)s-based micelles with various epoxides and diols via the Flory–Huggins theory: A molecular dynamics simulation approach. Phys. Chem. Chem. Phys. 2015, 17, 29161–29170. [CrossRef] 25. Bahar, I.; Erbil, H.Y.; Baysal, B.M.; Erman, B. Determination of polymer-solvent interaction parameter from swelling of networks: The system poly(2-hydroxyethyl methacrylate)-diethylene glycol. Macromolecules 1987, 20, 1353–1356. [CrossRef] 26. Lipinski, C.A.; Lombardo, F.; Dominy, B.W.; Feeney, P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev. 2001, 46, 3–26. [CrossRef] 27. Marquez, E.; Domínguez, R.M.; Mora, J.R.; Córdova, T.; Chuchani, G. Experimental and theoretical studies of the homogeneous, unimolecular gas-phase elimination kinetics of trimethyl orthovalerate and trimethyl orthochloroacetate. J. Phys. Chem. A 2010, 114, 4203–4209. [CrossRef] [PubMed] 28. Exner, K.S.; Over, H. Kinetics of electrocatalytic reactions from first-principles: A critical comparison with the ab initio thermodynamics approach. Acc. Chem. Res. 2017, 50, 1240–1247. [CrossRef] [PubMed] 29. Reed, A.E.; Curtiss, L.A.; Weinhold, F. Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem. Rev. 1988, 88, 899–926. [CrossRef] 30. Shirota, H.; Ushiyama, H. Hydrogen-bonding dynamics in aqueous solutions of amides and acids: Monomer, dimer, trimer, and polymer. J. Phys. Chem. B 2008, 112, 13542–13551. [CrossRef] [PubMed] 31. Liu, H.; Chen, J.; Shen, Q.; Fu, W.; Wu, W. Molecular insights on the cyclic peptide nanotube-mediated transportation of antitumor drug 5-fluorouracil. Mol. Pharm. 2010, 7, 1985–1994. [CrossRef] 32. Albertorio, F.; Hughes, M.E.; Golovchenko, J.A.; Branton, D. Base dependent DNA–carbon nanotube interactions: Activation enthalpies and assembly–disassembly control. Nanotechnology 2009, 20, 395101. [CrossRef] 33. Sparks, T.C.; Lorsbach, B.A. Agrochemical Discovery—Building the Next Generation of Insect Control Agents. In ACS Symposium Series; Gross, A.D., Ozoe, Y., Coats, J.R., Eds.; American Chemical Society: Washington, DC, USA, 2017; Volume 1264, pp. 1–17. ISBN 978-0-8412-3257-0. 34. Baldi, A. Computational approaches for drug design and discovery: An overview. Syst. Rev. Pharm. 2010, 1, 99. [CrossRef] 35. Gallo, M.; Favila, A.; Glossman-Mitnik, D. DFT studies of functionalized carbon nanotubes and fullerenes as nanovectors for drug delivery of antitubercular compounds. Chem. Phys. Lett. 2007, 447, 105–109. [CrossRef] 36. Karata¸s, D.; Tekin, A.; Bahadori, F.; Çelik, M.S. Interaction of curcumin in a drug delivery system including a composite with poly(lactic-co-glycolic acid) and montmorillonite: A density functional theory and molecular dynamics study. J. Mater. Chem. B 2017, 5, 8070–8082. [CrossRef] 37. Kaur, J.; Singla, P.; Goel, N. Adsorption of oxazole and isoxazole on BNNT surface: A DFT study. Appl. Surf. Sci. 2015, 328, 632–640. [CrossRef] 38. Liu, Z.; Fan, A.C.; Rakhra, K.; Sherlock, S.; Goodwin, A.; Chen, X.; Yang, Q.; Felsher, D.W.; Dai, H. Supramolecular stacking of doxorubicin on carbon nanotubes for in vivo cancer therapy. Angew. Chem. Int. Ed. Engl. 2009, 48, 7668–7672. [CrossRef] [PubMed] 39. Qin, W.; Li, X.; Bian, W.-W.; Fan, X.-J.; Qi, J.-Y. Density functional theory calculations and molecular dynamics simulations of the adsorption of biomolecules on graphene surfaces. Biomaterials 2010, 31, 1007–1016. [CrossRef] [PubMed] 40. Geerlings, P.; De Proft, F.; Langenaeker, W. Conceptual density functional theory. Chem. Rev. 2003, 103, 1793–1874. [CrossRef] [PubMed] 41. Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Scalmani, G.; Barone, V.; Petersson, G.A.; Nakatsuji, H.; et al. Gaussian16 Revision B.01; Gaussian, Inc.: Wallingford, CT, USA, 2016. 42. Sun, H.; Kabb, C.P.; Dai, Y.; Hill, M.R.; Ghiviriga, I.; Bapat, A.P.; Sumerlin, B.S. Macromolecular metamorphosis via stimulus-induced transformations of polymer architecture. Nat. Chem. 2017, 9, 817–823. [CrossRef] [PubMed] 43. Souza, B.S.; Mora, J.R.; Wanderlind, E.H.; Clementin, R.M.; Gesser, J.C.; Fiedler, H.D.; Nome, F.; Menger, F.M. Transforming a Stable Amide into a Highly Reactive One: Capturing the Essence of Enzymatic Catalysis. Angew. Chem. Int. Ed. 2017, 56, 5345–5348. [CrossRef] [PubMed] 44. Mora, J.R.; Cervantes, C.; Marquez, E. New Insight into the Chloroacetanilide Herbicide Degradation Mechanism through a Nucleophilic Attack of Hydrogen Sulfide. Int. J. Mol. Sci. 2018, 19, 2864. [CrossRef] [PubMed] 45. McQuarrie, D.A. Statistical Mechanics; University Science Books: Sausalito, CA, USA, 2000; ISBN 978-1-891389-15-3. 46. Tan, T.T.M.; Rode, B.M. Molecular modelling of polymers, 3. Prediction of glass transition temperatures of poly(acrylic acid), poly(methacrylic acid) and polyacrylamide derivatives. Macromol. Theory Simul. 1996, 5, 467–475. [CrossRef] 47. Scaranto, J.; Mallia, G.; Harrison, N.M. An efficient method for computing the binding energy of an adsorbed molecule within a periodic approach. The application to vinyl fluoride at rutile TiO2(110) surface. Comput. Mater. Sci. 2011, 50, 2080–2086. [CrossRef] 48. Chunsrivirot, S.; Trout, B.L. Free Energy of Binding of a Small Molecule to an Amorphous Polymer in a Solvent. Langmuir 2011, 27, 6910–6919. [CrossRef] [PubMed] 49. Gutowski, M.; Van Lenthe, J.H.; Verbeek, J.; Van Duijneveldt, F.B.; Chałasinski, G. The basis set superposition error in correlated electronic structure calculations. Chem. Phys. Lett. 1986, 124, 370–375. [CrossRef] 50. Kruse, H.; Grimme, S. A geometrical correction for the inter- and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems. J. Chem. Phys. 2012, 136, 154101. [CrossRef] [PubMed] 51. Ghose, A.K.; Crippen, G.M. Atomic Physicochemical Parameters for Three-Dimensional Structure-Directed Quantitative Structure-Activity Relationships I. Partition Coefficients as a Measure of Hydrophobicity. J. Comput. Chem. 1986, 7, 565–577. [CrossRef] 52. Zheng, Y.-Z.; Zhou, Y.; Liang, Q.; Chen, D.-F.; Guo, R.; Lai, R.-C. Hydrogen-bonding Interactions between Apigenin and Ethanol/Water: A Theoretical Study. Sci. Rep. 2016, 6, 34647. [CrossRef] [PubMed] 53. Magdaline, J.D.; Chithambarathanu, T. Natural bond orbital analysis and vibrational spectroscopic studies of 2-furoic acid using density functional theory. Appl. Phys. 2012, 50, 7. 54. Niklasson, A.M.N.; Challacombe, M. Density Matrix Perturbation Theory. Phys. Rev. Lett. 2004, 92. [CrossRef] [PubMed] |
dc.rights.uri.spa.fl_str_mv |
http://creativecommons.org/publicdomain/zero/1.0/ |
dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.coar.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
rights_invalid_str_mv |
http://creativecommons.org/publicdomain/zero/1.0/ http://purl.org/coar/access_right/c_abf2 |
eu_rights_str_mv |
openAccess |
dc.publisher.spa.fl_str_mv |
MDPI |
institution |
Corporación Universidad de la Costa |
bitstream.url.fl_str_mv |
https://repositorio.cuc.edu.co/bitstreams/bed5f28e-b449-4924-9b7f-60ae284961b0/download https://repositorio.cuc.edu.co/bitstreams/2740ba20-5af6-4738-8b07-fdbf753a6138/download https://repositorio.cuc.edu.co/bitstreams/d3f2b502-dca9-4ee7-9aa7-fdef9376d072/download https://repositorio.cuc.edu.co/bitstreams/912e5bbc-589c-4cd6-97ea-b3209a5cfd18/download https://repositorio.cuc.edu.co/bitstreams/ae65e5fe-6bbf-4021-9ac8-08e887512c9f/download |
bitstream.checksum.fl_str_mv |
49f537c8b8e9d5084d982f5f30e1d528 42fd4ad1e89814f5e4a476b409eb708c 8a4605be74aa9ea9d79846c1fba20a33 ec9d5e90c1670cc466f9904122951fa1 02f671b3a41a72692c1aa81ca91a8ed8 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositorio de la Universidad de la Costa CUC |
repository.mail.fl_str_mv |
repdigital@cuc.edu.co |
_version_ |
1811760762867154944 |
spelling |
Márquez, EdgarMora, José R.Puello, EsneyderRangel, NormaDe Moya, AldemarTrilleras, JorgeCortes, Eliceo2019-09-25T21:39:31Z2019-09-25T21:39:31Z2019-06-12https://hdl.handle.net/11323/5301Corporación Universidad de la CostaREDICUC - Repositorio CUChttps://repositorio.cuc.edu.co/The interaction between three widely used antimalarial drugs chloroquine, primaquine and amodiaquine with acrylamide dimer and trimer as a hydrogel model, were studied by means of density functional theory calculation in both vacuum and water environments, using the functional wb97xd with 6-31++G(d,p) basis set and polarizable continuum model (C-PCM) of solvent. According to binding energy, around −3.15 to −11.91 kJ/mol, the interaction between antimalarial compounds and hydrogel model are exothermic in nature. The extent of interaction found is primaquine > amodiaquine > chloroquine. The natural bond orbital (NBO) calculation and application of second-order perturbation theory show strong charge transfer between the antimalarial and hydrogel model. In addition, the results suggest these interactions are polar in nature, where hydrogen bonds play a principal role in stabilization of the complex. Comparing with the gas-phase, the complexes in the water environment are also stable, with suitable values of Log P (Partition coefficient), and dipolar momentum. Consequently, these results encourage to test acrylamide hydrogels as antimalarial delivery systems.Márquez, EdgarMora, José R.Puello, EsneyderRangel, NormaDe Moya, AldemarTrilleras, JorgeCortes, Eliceo-will be generated-orcid-0000-0002-9825-7722-600engMDPIhttps://www.raco.cat/index.php/afinidad/article/view/3590621. Organisation Mondiale de la Santé. World Malaria Report 2012 WHO Global Malaria Programme; World Health Organization: Geneva, Swizerland, 2012; ISBN 978-92-4-156453-3. 2. Al Qaraghuli, M.M.; Obeid, M.A.; Aldulaimi, O.; Ferro, V.A. Control of malaria by bio-therapeutics and drug delivery systems. J. Med. Microbiol. Diagn. 2017, 6, 260. [CrossRef] 3. Liu, J.; Xiao, Y.; Allen, C. Polymer–drug compatibility: A guide to the development of delivery systems for the anticancer agent, ellipticine. J. Pharm. Sci. 2004, 93, 132–143. [CrossRef] [PubMed] 4. Tang, H.; Zhao, W.; Yu, J.; Li, Y.; Zhao, C. Recent Development of pH-Responsive Polymers for Cancer Nanomedicine. Molecules 2019, 24, 4. [CrossRef] [PubMed] 5. Yang, L.; Sun, H.; Liu, Y.; Hou, W.; Yang, Y.; Cai, R.; Cui, C.; Zhang, P.; Pan, X.; Li, X.; et al. Self-Assembled Aptamer-Grafted Hyperbranched Polymer Nanocarrier for Targeted and Photoresponsive Drug Delivery. Angew. Chem. Int. Ed. 2018, 57, 17048–17052. [CrossRef] [PubMed] 6. Externally Triggered Heat and Drug Release from Magnetically Controlled Nanocarriers|ACS Applied Polymer Materials. Available online: https://pubs.acs.org/doi/pdf/10.1021/acsapm.8b00100 (accessed on 27 May 2019). 7. Murambiwa, P.; Masola, B.; Govender, T.; Mukaratirwa, S.; Musabayane, C.T. Anti-malarial drug formulations and novel delivery systems: A review. Acta Trop. 2011, 118, 71–79. [CrossRef] [PubMed] 8. Ganji, F.; Vasheghani-Farahani, S.; Vasheghani-Farahani, E. Theoretical description of hydrogel swelling: A review. Iran. Polym. J. 2010, 19, 375–398. 9. Huang, Y.; Jin, X.; Liu, H.; Hu, Y. A molecular thermodynamic model for the swelling of thermo-sensitive hydrogels. Fluid Phase Equilibria 2008, 263, 96–101. [CrossRef] 10. Cai, S.; Suo, Z. Mechanics and chemical thermodynamics of phase transition in temperature-sensitive hydrogels. J. Mech. Phys. Solids 2011, 59, 2259–2278. [CrossRef] 11. Du, X.; Zhou, J.; Shi, J.; Xu, B. Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials. Chem. Rev. 2015, 115, 13165–13307. [CrossRef] 12. Huynh, L.; Neale, C.; Pomès, R.; Allen, C. Computational approaches to the rational design of nanoemulsions, polymeric micelles, and dendrimers for drug delivery. Nanomed.: Nanotechnol. Biol. Med. 2012, 8, 20–36. [CrossRef] 13. Shen, E.; Kipper, M.J.; Dziadul, B.; Lim, M.-K.; Narasimhan, B. Mechanistic relationships between polymer microstructure and drug release kinetics in bioerodible polyanhydrides. J. Control. Release 2002, 82, 115–125. [CrossRef] 14. Park, J.; Ye, M.; Park, K. Biodegradable polymers for microencapsulation of drugs. Molecules 2005, 10, 146–161. [CrossRef] [PubMed] 15. Weiss, R.G.; Terech, P. (Eds.) Molecular Gels: Materials with Self-Assembled Fibrillar Networks; Springer: Dordrecht, The Netherlands, 2006; ISBN 978-1-4020-3352-0. 16. Zweep, N.; Hopkinson, A.; Meetsma, A.; Browne, W.R.; Feringa, B.L.; van Esch, J.H. balancing hydrogen bonding and van der waals interactions in cyclohexane-based bisamide and bisurea organogelators. Langmuir 2009, 25, 8802–8809. [CrossRef] [PubMed] 17. Hoy, R.S.; Fredrickson, G.H. Thermoreversible associating polymer networks. I. Interplay of thermodynamics, chemical kinetics, and polymer physics. J. Chem. Phys. 2009, 131, 224902. [CrossRef] [PubMed] 18. Maniruzzaman, M.; Pang, J.; Morgan, D.J.; Douroumis, D. Molecular Modeling as a Predictive Tool for the Development of Solid Dispersions. Available online: https://pubs.acs.org/doi/abs/10.1021/mp500510m (accessed on 3 November 2018). 19. Maniruzzaman, M.; Morgan, D.J.; Mendham, A.P.; Pang, J.; Snowden, M.J.; Douroumis, D. Drug–polymer intermolecular interactions in hot-melt extruded solid dispersions. Int. J. Pharm. 2013, 443, 199–208. [CrossRef] [PubMed] 20. Schmaljohann, D. Thermo- and pH-responsive polymers in drug delivery. Adv. Drug Deliv. Rev. 2006, 58, 1655–1670. [CrossRef] [PubMed] 21. Seiffert, S.; Sprakel, J. Physical chemistry of supramolecular polymer networks. Chem. Soc. Rev. 2012, 41, 909–930. [CrossRef] [PubMed] 22. Tanaka, F. Theoretical Study of Molecular Association and Thermoreversible Gelation in Polymers. Polym. J. 2002, 34, 479–509. [CrossRef] 23. Peppas, N.A.; Huang, Y.; Torres-Lugo, M.; Ward, J.H.; Zhang, J. Physicochemical Foundations and Structural Design of Hydrogels in Medicine and Biology. Annu. Rev. Biomed. Eng. 2000, 2, 9–29. [CrossRef] 24. Chun, B.J.; Lu, J.; Weck, M.; Jang, S.S. Characterization of molecular association of poly(2-oxazoline)s-based micelles with various epoxides and diols via the Flory–Huggins theory: A molecular dynamics simulation approach. Phys. Chem. Chem. Phys. 2015, 17, 29161–29170. [CrossRef] 25. Bahar, I.; Erbil, H.Y.; Baysal, B.M.; Erman, B. Determination of polymer-solvent interaction parameter from swelling of networks: The system poly(2-hydroxyethyl methacrylate)-diethylene glycol. Macromolecules 1987, 20, 1353–1356. [CrossRef] 26. Lipinski, C.A.; Lombardo, F.; Dominy, B.W.; Feeney, P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev. 2001, 46, 3–26. [CrossRef] 27. Marquez, E.; Domínguez, R.M.; Mora, J.R.; Córdova, T.; Chuchani, G. Experimental and theoretical studies of the homogeneous, unimolecular gas-phase elimination kinetics of trimethyl orthovalerate and trimethyl orthochloroacetate. J. Phys. Chem. A 2010, 114, 4203–4209. [CrossRef] [PubMed] 28. Exner, K.S.; Over, H. Kinetics of electrocatalytic reactions from first-principles: A critical comparison with the ab initio thermodynamics approach. Acc. Chem. Res. 2017, 50, 1240–1247. [CrossRef] [PubMed] 29. Reed, A.E.; Curtiss, L.A.; Weinhold, F. Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem. Rev. 1988, 88, 899–926. [CrossRef] 30. Shirota, H.; Ushiyama, H. Hydrogen-bonding dynamics in aqueous solutions of amides and acids: Monomer, dimer, trimer, and polymer. J. Phys. Chem. B 2008, 112, 13542–13551. [CrossRef] [PubMed] 31. Liu, H.; Chen, J.; Shen, Q.; Fu, W.; Wu, W. Molecular insights on the cyclic peptide nanotube-mediated transportation of antitumor drug 5-fluorouracil. Mol. Pharm. 2010, 7, 1985–1994. [CrossRef] 32. Albertorio, F.; Hughes, M.E.; Golovchenko, J.A.; Branton, D. Base dependent DNA–carbon nanotube interactions: Activation enthalpies and assembly–disassembly control. Nanotechnology 2009, 20, 395101. [CrossRef] 33. Sparks, T.C.; Lorsbach, B.A. Agrochemical Discovery—Building the Next Generation of Insect Control Agents. In ACS Symposium Series; Gross, A.D., Ozoe, Y., Coats, J.R., Eds.; American Chemical Society: Washington, DC, USA, 2017; Volume 1264, pp. 1–17. ISBN 978-0-8412-3257-0. 34. Baldi, A. Computational approaches for drug design and discovery: An overview. Syst. Rev. Pharm. 2010, 1, 99. [CrossRef] 35. Gallo, M.; Favila, A.; Glossman-Mitnik, D. DFT studies of functionalized carbon nanotubes and fullerenes as nanovectors for drug delivery of antitubercular compounds. Chem. Phys. Lett. 2007, 447, 105–109. [CrossRef] 36. Karata¸s, D.; Tekin, A.; Bahadori, F.; Çelik, M.S. Interaction of curcumin in a drug delivery system including a composite with poly(lactic-co-glycolic acid) and montmorillonite: A density functional theory and molecular dynamics study. J. Mater. Chem. B 2017, 5, 8070–8082. [CrossRef] 37. Kaur, J.; Singla, P.; Goel, N. Adsorption of oxazole and isoxazole on BNNT surface: A DFT study. Appl. Surf. Sci. 2015, 328, 632–640. [CrossRef] 38. Liu, Z.; Fan, A.C.; Rakhra, K.; Sherlock, S.; Goodwin, A.; Chen, X.; Yang, Q.; Felsher, D.W.; Dai, H. Supramolecular stacking of doxorubicin on carbon nanotubes for in vivo cancer therapy. Angew. Chem. Int. Ed. Engl. 2009, 48, 7668–7672. [CrossRef] [PubMed] 39. Qin, W.; Li, X.; Bian, W.-W.; Fan, X.-J.; Qi, J.-Y. Density functional theory calculations and molecular dynamics simulations of the adsorption of biomolecules on graphene surfaces. Biomaterials 2010, 31, 1007–1016. [CrossRef] [PubMed] 40. Geerlings, P.; De Proft, F.; Langenaeker, W. Conceptual density functional theory. Chem. Rev. 2003, 103, 1793–1874. [CrossRef] [PubMed] 41. Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Scalmani, G.; Barone, V.; Petersson, G.A.; Nakatsuji, H.; et al. Gaussian16 Revision B.01; Gaussian, Inc.: Wallingford, CT, USA, 2016. 42. Sun, H.; Kabb, C.P.; Dai, Y.; Hill, M.R.; Ghiviriga, I.; Bapat, A.P.; Sumerlin, B.S. Macromolecular metamorphosis via stimulus-induced transformations of polymer architecture. Nat. Chem. 2017, 9, 817–823. [CrossRef] [PubMed] 43. Souza, B.S.; Mora, J.R.; Wanderlind, E.H.; Clementin, R.M.; Gesser, J.C.; Fiedler, H.D.; Nome, F.; Menger, F.M. Transforming a Stable Amide into a Highly Reactive One: Capturing the Essence of Enzymatic Catalysis. Angew. Chem. Int. Ed. 2017, 56, 5345–5348. [CrossRef] [PubMed] 44. Mora, J.R.; Cervantes, C.; Marquez, E. New Insight into the Chloroacetanilide Herbicide Degradation Mechanism through a Nucleophilic Attack of Hydrogen Sulfide. Int. J. Mol. Sci. 2018, 19, 2864. [CrossRef] [PubMed] 45. McQuarrie, D.A. Statistical Mechanics; University Science Books: Sausalito, CA, USA, 2000; ISBN 978-1-891389-15-3. 46. Tan, T.T.M.; Rode, B.M. Molecular modelling of polymers, 3. Prediction of glass transition temperatures of poly(acrylic acid), poly(methacrylic acid) and polyacrylamide derivatives. Macromol. Theory Simul. 1996, 5, 467–475. [CrossRef] 47. Scaranto, J.; Mallia, G.; Harrison, N.M. An efficient method for computing the binding energy of an adsorbed molecule within a periodic approach. The application to vinyl fluoride at rutile TiO2(110) surface. Comput. Mater. Sci. 2011, 50, 2080–2086. [CrossRef] 48. Chunsrivirot, S.; Trout, B.L. Free Energy of Binding of a Small Molecule to an Amorphous Polymer in a Solvent. Langmuir 2011, 27, 6910–6919. [CrossRef] [PubMed] 49. Gutowski, M.; Van Lenthe, J.H.; Verbeek, J.; Van Duijneveldt, F.B.; Chałasinski, G. The basis set superposition error in correlated electronic structure calculations. Chem. Phys. Lett. 1986, 124, 370–375. [CrossRef] 50. Kruse, H.; Grimme, S. A geometrical correction for the inter- and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems. J. Chem. Phys. 2012, 136, 154101. [CrossRef] [PubMed] 51. Ghose, A.K.; Crippen, G.M. Atomic Physicochemical Parameters for Three-Dimensional Structure-Directed Quantitative Structure-Activity Relationships I. Partition Coefficients as a Measure of Hydrophobicity. J. Comput. Chem. 1986, 7, 565–577. [CrossRef] 52. Zheng, Y.-Z.; Zhou, Y.; Liang, Q.; Chen, D.-F.; Guo, R.; Lai, R.-C. Hydrogen-bonding Interactions between Apigenin and Ethanol/Water: A Theoretical Study. Sci. Rep. 2016, 6, 34647. [CrossRef] [PubMed] 53. Magdaline, J.D.; Chithambarathanu, T. Natural bond orbital analysis and vibrational spectroscopic studies of 2-furoic acid using density functional theory. Appl. Phys. 2012, 50, 7. 54. Niklasson, A.M.N.; Challacombe, M. Density Matrix Perturbation Theory. Phys. Rev. Lett. 2004, 92. [CrossRef] [PubMed]http://creativecommons.org/publicdomain/zero/1.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Plasmodium falciparumHydrogen bondHydrogelComputational modelingBinding energyDrug-delivery systemTheoretical study of the adsorption process of antimalarial drugs into acrylamide-base hydrogel model using dft methods: the first approach to the rational design of a controlled drug delivery systemArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1Textinfo:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/acceptedVersionPublicationORIGINALprocesses-07-00396 (2).pdfprocesses-07-00396 (2).pdfapplication/pdf1401200https://repositorio.cuc.edu.co/bitstreams/bed5f28e-b449-4924-9b7f-60ae284961b0/download49f537c8b8e9d5084d982f5f30e1d528MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8701https://repositorio.cuc.edu.co/bitstreams/2740ba20-5af6-4738-8b07-fdbf753a6138/download42fd4ad1e89814f5e4a476b409eb708cMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.cuc.edu.co/bitstreams/d3f2b502-dca9-4ee7-9aa7-fdef9376d072/download8a4605be74aa9ea9d79846c1fba20a33MD53THUMBNAILprocesses-07-00396 (2).pdf.jpgprocesses-07-00396 (2).pdf.jpgimage/jpeg65455https://repositorio.cuc.edu.co/bitstreams/912e5bbc-589c-4cd6-97ea-b3209a5cfd18/downloadec9d5e90c1670cc466f9904122951fa1MD55TEXTprocesses-07-00396 (2).pdf.txtprocesses-07-00396 (2).pdf.txttext/plain38484https://repositorio.cuc.edu.co/bitstreams/ae65e5fe-6bbf-4021-9ac8-08e887512c9f/download02f671b3a41a72692c1aa81ca91a8ed8MD5611323/5301oai:repositorio.cuc.edu.co:11323/53012024-09-17 11:02:23.597http://creativecommons.org/publicdomain/zero/1.0/open.accesshttps://repositorio.cuc.edu.coRepositorio de la Universidad de la Costa CUCrepdigital@cuc.edu.coTk9URTogUExBQ0UgWU9VUiBPV04gTElDRU5TRSBIRVJFClRoaXMgc2FtcGxlIGxpY2Vuc2UgaXMgcHJvdmlkZWQgZm9yIGluZm9ybWF0aW9uYWwgcHVycG9zZXMgb25seS4KCk5PTi1FWENMVVNJVkUgRElTVFJJQlVUSU9OIExJQ0VOU0UKCkJ5IHNpZ25pbmcgYW5kIHN1Ym1pdHRpbmcgdGhpcyBsaWNlbnNlLCB5b3UgKHRoZSBhdXRob3Iocykgb3IgY29weXJpZ2h0Cm93bmVyKSBncmFudHMgdG8gRFNwYWNlIFVuaXZlcnNpdHkgKERTVSkgdGhlIG5vbi1leGNsdXNpdmUgcmlnaHQgdG8gcmVwcm9kdWNlLAp0cmFuc2xhdGUgKGFzIGRlZmluZWQgYmVsb3cpLCBhbmQvb3IgZGlzdHJpYnV0ZSB5b3VyIHN1Ym1pc3Npb24gKGluY2x1ZGluZwp0aGUgYWJzdHJhY3QpIHdvcmxkd2lkZSBpbiBwcmludCBhbmQgZWxlY3Ryb25pYyBmb3JtYXQgYW5kIGluIGFueSBtZWRpdW0sCmluY2x1ZGluZyBidXQgbm90IGxpbWl0ZWQgdG8gYXVkaW8gb3IgdmlkZW8uCgpZb3UgYWdyZWUgdGhhdCBEU1UgbWF5LCB3aXRob3V0IGNoYW5naW5nIHRoZSBjb250ZW50LCB0cmFuc2xhdGUgdGhlCnN1Ym1pc3Npb24gdG8gYW55IG1lZGl1bSBvciBmb3JtYXQgZm9yIHRoZSBwdXJwb3NlIG9mIHByZXNlcnZhdGlvbi4KCllvdSBhbHNvIGFncmVlIHRoYXQgRFNVIG1heSBrZWVwIG1vcmUgdGhhbiBvbmUgY29weSBvZiB0aGlzIHN1Ym1pc3Npb24gZm9yCnB1cnBvc2VzIG9mIHNlY3VyaXR5LCBiYWNrLXVwIGFuZCBwcmVzZXJ2YXRpb24uCgpZb3UgcmVwcmVzZW50IHRoYXQgdGhlIHN1Ym1pc3Npb24gaXMgeW91ciBvcmlnaW5hbCB3b3JrLCBhbmQgdGhhdCB5b3UgaGF2ZQp0aGUgcmlnaHQgdG8gZ3JhbnQgdGhlIHJpZ2h0cyBjb250YWluZWQgaW4gdGhpcyBsaWNlbnNlLiBZb3UgYWxzbyByZXByZXNlbnQKdGhhdCB5b3VyIHN1Ym1pc3Npb24gZG9lcyBub3QsIHRvIHRoZSBiZXN0IG9mIHlvdXIga25vd2xlZGdlLCBpbmZyaW5nZSB1cG9uCmFueW9uZSdzIGNvcHlyaWdodC4KCklmIHRoZSBzdWJtaXNzaW9uIGNvbnRhaW5zIG1hdGVyaWFsIGZvciB3aGljaCB5b3UgZG8gbm90IGhvbGQgY29weXJpZ2h0LAp5b3UgcmVwcmVzZW50IHRoYXQgeW91IGhhdmUgb2J0YWluZWQgdGhlIHVucmVzdHJpY3RlZCBwZXJtaXNzaW9uIG9mIHRoZQpjb3B5cmlnaHQgb3duZXIgdG8gZ3JhbnQgRFNVIHRoZSByaWdodHMgcmVxdWlyZWQgYnkgdGhpcyBsaWNlbnNlLCBhbmQgdGhhdApzdWNoIHRoaXJkLXBhcnR5IG93bmVkIG1hdGVyaWFsIGlzIGNsZWFybHkgaWRlbnRpZmllZCBhbmQgYWNrbm93bGVkZ2VkCndpdGhpbiB0aGUgdGV4dCBvciBjb250ZW50IG9mIHRoZSBzdWJtaXNzaW9uLgoKSUYgVEhFIFNVQk1JU1NJT04gSVMgQkFTRUQgVVBPTiBXT1JLIFRIQVQgSEFTIEJFRU4gU1BPTlNPUkVEIE9SIFNVUFBPUlRFRApCWSBBTiBBR0VOQ1kgT1IgT1JHQU5JWkFUSU9OIE9USEVSIFRIQU4gRFNVLCBZT1UgUkVQUkVTRU5UIFRIQVQgWU9VIEhBVkUKRlVMRklMTEVEIEFOWSBSSUdIVCBPRiBSRVZJRVcgT1IgT1RIRVIgT0JMSUdBVElPTlMgUkVRVUlSRUQgQlkgU1VDSApDT05UUkFDVCBPUiBBR1JFRU1FTlQuCgpEU1Ugd2lsbCBjbGVhcmx5IGlkZW50aWZ5IHlvdXIgbmFtZShzKSBhcyB0aGUgYXV0aG9yKHMpIG9yIG93bmVyKHMpIG9mIHRoZQpzdWJtaXNzaW9uLCBhbmQgd2lsbCBub3QgbWFrZSBhbnkgYWx0ZXJhdGlvbiwgb3RoZXIgdGhhbiBhcyBhbGxvd2VkIGJ5IHRoaXMKbGljZW5zZSwgdG8geW91ciBzdWJtaXNzaW9uLgo= |