Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health c...
- Autores:
-
Escorcia-Gutierrez, Jose
Torrents-Barrena, Jordina
Gamarra, Margarita
Romero-Aroca, Pedro
Valls, Aida
Puig, Domenec
- Tipo de recurso:
- http://purl.org/coar/resource_type/c_816b
- Fecha de publicación:
- 2020
- Institución:
- Corporación Universidad de la Costa
- Repositorio:
- REDICUC - Repositorio CUC
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.cuc.edu.co:11323/7691
- Acceso en línea:
- https://hdl.handle.net/11323/7691
https://doi.org/10.1016/j.compbiomed.2020.104049
https://repositorio.cuc.edu.co/
- Palabra clave:
- Diabetic retinopathy
Blood vessel segmentation
Convexity shape prior
Foveal avascular zone detection
- Rights
- openAccess
- License
- CC0 1.0 Universal
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|
dc.title.spa.fl_str_mv |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
title |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
spellingShingle |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection Diabetic retinopathy Blood vessel segmentation Convexity shape prior Foveal avascular zone detection |
title_short |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
title_full |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
title_fullStr |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
title_full_unstemmed |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
title_sort |
Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection |
dc.creator.fl_str_mv |
Escorcia-Gutierrez, Jose Torrents-Barrena, Jordina Gamarra, Margarita Romero-Aroca, Pedro Valls, Aida Puig, Domenec |
dc.contributor.author.spa.fl_str_mv |
Escorcia-Gutierrez, Jose Torrents-Barrena, Jordina Gamarra, Margarita Romero-Aroca, Pedro Valls, Aida Puig, Domenec |
dc.subject.spa.fl_str_mv |
Diabetic retinopathy Blood vessel segmentation Convexity shape prior Foveal avascular zone detection |
topic |
Diabetic retinopathy Blood vessel segmentation Convexity shape prior Foveal avascular zone detection |
description |
Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health care. New computer vision techniques are needed to improve upon traditional screening of color fundus images. The segmentation of the entire anatomical structure of the retina is a crucial phase in detecting these pathologies. This work proposes a novel framework for fast and fully automatic blood vessel segmentation and fovea detection. The preprocessing method involved both contrast limited adaptive histogram equalization and the brightness preserving dynamic fuzzy histogram equalization algorithms to enhance image contrast and eliminate noise artifacts. Afterwards, the color spaces and their intrinsic components were examined to identify the most suitable color model to reveal the foreground pixels against the entire background. Several samples were then collected and used by the renowned convexity shape prior segmentation algorithm. The proposed methodology achieved an average vasculature segmentation accuracy exceeding 96%, 95%, 98% and 94% for the DRIVE, STARE, HRF and Messidor publicly available datasets, respectively. An additional validation step reached an average accuracy of 94.30% using an in-house dataset provided by the Hospital Sant Joan of Reus (Spain). Moreover, an outstanding detection accuracy of over 98% was achieved for the foveal avascular zone. An extensive state-of-the-art comparison was also conducted. The proposed approach can thus be integrated into daily clinical practice to assist medical experts in the diagnosis of DR. |
publishDate |
2020 |
dc.date.issued.none.fl_str_mv |
2020 |
dc.date.accessioned.none.fl_str_mv |
2021-01-15T13:58:39Z |
dc.date.available.none.fl_str_mv |
2021-01-15T13:58:39Z |
dc.type.spa.fl_str_mv |
Pre-Publicación |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_816b |
dc.type.content.spa.fl_str_mv |
Text |
dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/preprint |
dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ARTOTR |
dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/acceptedVersion |
format |
http://purl.org/coar/resource_type/c_816b |
status_str |
acceptedVersion |
dc.identifier.issn.spa.fl_str_mv |
0010-4825 |
dc.identifier.uri.spa.fl_str_mv |
https://hdl.handle.net/11323/7691 |
dc.identifier.doi.spa.fl_str_mv |
https://doi.org/10.1016/j.compbiomed.2020.104049 1879-0534 |
dc.identifier.instname.spa.fl_str_mv |
Corporación Universidad de la Costa |
dc.identifier.reponame.spa.fl_str_mv |
REDICUC - Repositorio CUC |
dc.identifier.repourl.spa.fl_str_mv |
https://repositorio.cuc.edu.co/ |
identifier_str_mv |
0010-4825 1879-0534 Corporación Universidad de la Costa REDICUC - Repositorio CUC |
url |
https://hdl.handle.net/11323/7691 https://doi.org/10.1016/j.compbiomed.2020.104049 https://repositorio.cuc.edu.co/ |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.rights.spa.fl_str_mv |
CC0 1.0 Universal |
dc.rights.uri.spa.fl_str_mv |
http://creativecommons.org/publicdomain/zero/1.0/ |
dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.coar.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
rights_invalid_str_mv |
CC0 1.0 Universal http://creativecommons.org/publicdomain/zero/1.0/ http://purl.org/coar/access_right/c_abf2 |
eu_rights_str_mv |
openAccess |
dc.format.mimetype.spa.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Corporación Universidad de la Costa |
dc.source.spa.fl_str_mv |
Computers in Biology and Medicine |
institution |
Corporación Universidad de la Costa |
dc.source.url.spa.fl_str_mv |
https://www.sciencedirect.com/science/article/abs/pii/S0010482520303802?dgcid=rss_sd_all |
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Escorcia-Gutierrez, JoseTorrents-Barrena, JordinaGamarra, MargaritaRomero-Aroca, PedroValls, AidaPuig, Domenec2021-01-15T13:58:39Z2021-01-15T13:58:39Z20200010-4825https://hdl.handle.net/11323/7691https://doi.org/10.1016/j.compbiomed.2020.1040491879-0534Corporación Universidad de la CostaREDICUC - Repositorio CUChttps://repositorio.cuc.edu.co/Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health care. New computer vision techniques are needed to improve upon traditional screening of color fundus images. The segmentation of the entire anatomical structure of the retina is a crucial phase in detecting these pathologies. This work proposes a novel framework for fast and fully automatic blood vessel segmentation and fovea detection. The preprocessing method involved both contrast limited adaptive histogram equalization and the brightness preserving dynamic fuzzy histogram equalization algorithms to enhance image contrast and eliminate noise artifacts. Afterwards, the color spaces and their intrinsic components were examined to identify the most suitable color model to reveal the foreground pixels against the entire background. Several samples were then collected and used by the renowned convexity shape prior segmentation algorithm. The proposed methodology achieved an average vasculature segmentation accuracy exceeding 96%, 95%, 98% and 94% for the DRIVE, STARE, HRF and Messidor publicly available datasets, respectively. An additional validation step reached an average accuracy of 94.30% using an in-house dataset provided by the Hospital Sant Joan of Reus (Spain). Moreover, an outstanding detection accuracy of over 98% was achieved for the foveal avascular zone. An extensive state-of-the-art comparison was also conducted. The proposed approach can thus be integrated into daily clinical practice to assist medical experts in the diagnosis of DR.Escorcia-Gutierrez, Jose-will be generated-orcid-0000-0003-0518-3187-600Torrents-Barrena, Jordina-will be generated-orcid-0000-0002-7380-6297-600Gamarra, Margarita-will be generated-orcid-0000-0003-1834-2984-600Romero-Aroca, Pedro-will be generated-orcid-0000-0002-7061-8987-600Valls, Aida-will be generated-orcid-0000-0003-3616-7809-600Puig, Domenec-will be generated-orcid-0000-0002-0562-4205-600application/pdfengCorporación Universidad de la CostaCC0 1.0 Universalhttp://creativecommons.org/publicdomain/zero/1.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Computers in Biology and Medicinehttps://www.sciencedirect.com/science/article/abs/pii/S0010482520303802?dgcid=rss_sd_allDiabetic retinopathyBlood vessel segmentationConvexity shape priorFoveal avascular zone detectionConvexity shape constraints for retinal blood vessel segmentation and 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