Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection

Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health c...

Full description

Autores:
Escorcia-Gutierrez, Jose
Torrents-Barrena, Jordina
Gamarra, Margarita
Romero-Aroca, Pedro
Valls, Aida
Puig, Domenec
Tipo de recurso:
http://purl.org/coar/resource_type/c_816b
Fecha de publicación:
2020
Institución:
Corporación Universidad de la Costa
Repositorio:
REDICUC - Repositorio CUC
Idioma:
eng
OAI Identifier:
oai:repositorio.cuc.edu.co:11323/7691
Acceso en línea:
https://hdl.handle.net/11323/7691
https://doi.org/10.1016/j.compbiomed.2020.104049
https://repositorio.cuc.edu.co/
Palabra clave:
Diabetic retinopathy
Blood vessel segmentation
Convexity shape prior
Foveal avascular zone detection
Rights
openAccess
License
CC0 1.0 Universal
id RCUC2_aa6c9a7933c873a4acbd937a8ce44507
oai_identifier_str oai:repositorio.cuc.edu.co:11323/7691
network_acronym_str RCUC2
network_name_str REDICUC - Repositorio CUC
repository_id_str
dc.title.spa.fl_str_mv Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
title Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
spellingShingle Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
Diabetic retinopathy
Blood vessel segmentation
Convexity shape prior
Foveal avascular zone detection
title_short Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
title_full Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
title_fullStr Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
title_full_unstemmed Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
title_sort Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection
dc.creator.fl_str_mv Escorcia-Gutierrez, Jose
Torrents-Barrena, Jordina
Gamarra, Margarita
Romero-Aroca, Pedro
Valls, Aida
Puig, Domenec
dc.contributor.author.spa.fl_str_mv Escorcia-Gutierrez, Jose
Torrents-Barrena, Jordina
Gamarra, Margarita
Romero-Aroca, Pedro
Valls, Aida
Puig, Domenec
dc.subject.spa.fl_str_mv Diabetic retinopathy
Blood vessel segmentation
Convexity shape prior
Foveal avascular zone detection
topic Diabetic retinopathy
Blood vessel segmentation
Convexity shape prior
Foveal avascular zone detection
description Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health care. New computer vision techniques are needed to improve upon traditional screening of color fundus images. The segmentation of the entire anatomical structure of the retina is a crucial phase in detecting these pathologies. This work proposes a novel framework for fast and fully automatic blood vessel segmentation and fovea detection. The preprocessing method involved both contrast limited adaptive histogram equalization and the brightness preserving dynamic fuzzy histogram equalization algorithms to enhance image contrast and eliminate noise artifacts. Afterwards, the color spaces and their intrinsic components were examined to identify the most suitable color model to reveal the foreground pixels against the entire background. Several samples were then collected and used by the renowned convexity shape prior segmentation algorithm. The proposed methodology achieved an average vasculature segmentation accuracy exceeding 96%, 95%, 98% and 94% for the DRIVE, STARE, HRF and Messidor publicly available datasets, respectively. An additional validation step reached an average accuracy of 94.30% using an in-house dataset provided by the Hospital Sant Joan of Reus (Spain). Moreover, an outstanding detection accuracy of over 98% was achieved for the foveal avascular zone. An extensive state-of-the-art comparison was also conducted. The proposed approach can thus be integrated into daily clinical practice to assist medical experts in the diagnosis of DR.
publishDate 2020
dc.date.issued.none.fl_str_mv 2020
dc.date.accessioned.none.fl_str_mv 2021-01-15T13:58:39Z
dc.date.available.none.fl_str_mv 2021-01-15T13:58:39Z
dc.type.spa.fl_str_mv Pre-Publicación
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_816b
dc.type.content.spa.fl_str_mv Text
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/preprint
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/ARTOTR
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
format http://purl.org/coar/resource_type/c_816b
status_str acceptedVersion
dc.identifier.issn.spa.fl_str_mv 0010-4825
dc.identifier.uri.spa.fl_str_mv https://hdl.handle.net/11323/7691
dc.identifier.doi.spa.fl_str_mv https://doi.org/10.1016/j.compbiomed.2020.104049
1879-0534
dc.identifier.instname.spa.fl_str_mv Corporación Universidad de la Costa
dc.identifier.reponame.spa.fl_str_mv REDICUC - Repositorio CUC
dc.identifier.repourl.spa.fl_str_mv https://repositorio.cuc.edu.co/
identifier_str_mv 0010-4825
1879-0534
Corporación Universidad de la Costa
REDICUC - Repositorio CUC
url https://hdl.handle.net/11323/7691
https://doi.org/10.1016/j.compbiomed.2020.104049
https://repositorio.cuc.edu.co/
dc.language.iso.none.fl_str_mv eng
language eng
dc.rights.spa.fl_str_mv CC0 1.0 Universal
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/publicdomain/zero/1.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv CC0 1.0 Universal
http://creativecommons.org/publicdomain/zero/1.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Corporación Universidad de la Costa
dc.source.spa.fl_str_mv Computers in Biology and Medicine
institution Corporación Universidad de la Costa
dc.source.url.spa.fl_str_mv https://www.sciencedirect.com/science/article/abs/pii/S0010482520303802?dgcid=rss_sd_all
bitstream.url.fl_str_mv https://repositorio.cuc.edu.co/bitstreams/e28dc83f-f020-454d-9eb1-1ccd3c90bf07/download
https://repositorio.cuc.edu.co/bitstreams/7161550a-91f1-490a-9a47-fe7cf4ec452a/download
https://repositorio.cuc.edu.co/bitstreams/f2497655-e683-4b0e-8a0b-2a0a5cf4bb37/download
https://repositorio.cuc.edu.co/bitstreams/cfff6db3-4d10-4284-9c28-740808cd79bf/download
https://repositorio.cuc.edu.co/bitstreams/d30b3576-19af-4a2a-9bf9-ce55a25b1a2f/download
bitstream.checksum.fl_str_mv 80a4af27a27c316ff8c96f53d916f3db
42fd4ad1e89814f5e4a476b409eb708c
e30e9215131d99561d40d6b0abbe9bad
f4b988e91d2e47860392517dd1495fc0
d677dbe25dc6a207d29e5a6a0390cfe5
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio de la Universidad de la Costa CUC
repository.mail.fl_str_mv repdigital@cuc.edu.co
_version_ 1811760792381423616
spelling Escorcia-Gutierrez, JoseTorrents-Barrena, JordinaGamarra, MargaritaRomero-Aroca, PedroValls, AidaPuig, Domenec2021-01-15T13:58:39Z2021-01-15T13:58:39Z20200010-4825https://hdl.handle.net/11323/7691https://doi.org/10.1016/j.compbiomed.2020.1040491879-0534Corporación Universidad de la CostaREDICUC - Repositorio CUChttps://repositorio.cuc.edu.co/Diabetic retinopathy (DR) has become a major worldwide health problem due to the increase in blindness among diabetics at early ages. The detection of DR pathologies such as microaneurysms, hemorrhages and exudates through advanced computational techniques is of utmost importance in patient health care. New computer vision techniques are needed to improve upon traditional screening of color fundus images. The segmentation of the entire anatomical structure of the retina is a crucial phase in detecting these pathologies. This work proposes a novel framework for fast and fully automatic blood vessel segmentation and fovea detection. The preprocessing method involved both contrast limited adaptive histogram equalization and the brightness preserving dynamic fuzzy histogram equalization algorithms to enhance image contrast and eliminate noise artifacts. Afterwards, the color spaces and their intrinsic components were examined to identify the most suitable color model to reveal the foreground pixels against the entire background. Several samples were then collected and used by the renowned convexity shape prior segmentation algorithm. The proposed methodology achieved an average vasculature segmentation accuracy exceeding 96%, 95%, 98% and 94% for the DRIVE, STARE, HRF and Messidor publicly available datasets, respectively. An additional validation step reached an average accuracy of 94.30% using an in-house dataset provided by the Hospital Sant Joan of Reus (Spain). Moreover, an outstanding detection accuracy of over 98% was achieved for the foveal avascular zone. An extensive state-of-the-art comparison was also conducted. The proposed approach can thus be integrated into daily clinical practice to assist medical experts in the diagnosis of DR.Escorcia-Gutierrez, Jose-will be generated-orcid-0000-0003-0518-3187-600Torrents-Barrena, Jordina-will be generated-orcid-0000-0002-7380-6297-600Gamarra, Margarita-will be generated-orcid-0000-0003-1834-2984-600Romero-Aroca, Pedro-will be generated-orcid-0000-0002-7061-8987-600Valls, Aida-will be generated-orcid-0000-0003-3616-7809-600Puig, Domenec-will be generated-orcid-0000-0002-0562-4205-600application/pdfengCorporación Universidad de la CostaCC0 1.0 Universalhttp://creativecommons.org/publicdomain/zero/1.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Computers in Biology and Medicinehttps://www.sciencedirect.com/science/article/abs/pii/S0010482520303802?dgcid=rss_sd_allDiabetic retinopathyBlood vessel segmentationConvexity shape priorFoveal avascular zone detectionConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detectionPre-Publicaciónhttp://purl.org/coar/resource_type/c_816bTextinfo:eu-repo/semantics/preprinthttp://purl.org/redcol/resource_type/ARTOTRinfo:eu-repo/semantics/acceptedVersionPublicationORIGINALConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdfConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdfapplication/pdf57054https://repositorio.cuc.edu.co/bitstreams/e28dc83f-f020-454d-9eb1-1ccd3c90bf07/download80a4af27a27c316ff8c96f53d916f3dbMD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8701https://repositorio.cuc.edu.co/bitstreams/7161550a-91f1-490a-9a47-fe7cf4ec452a/download42fd4ad1e89814f5e4a476b409eb708cMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-83196https://repositorio.cuc.edu.co/bitstreams/f2497655-e683-4b0e-8a0b-2a0a5cf4bb37/downloade30e9215131d99561d40d6b0abbe9badMD53THUMBNAILConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdf.jpgConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdf.jpgimage/jpeg75975https://repositorio.cuc.edu.co/bitstreams/cfff6db3-4d10-4284-9c28-740808cd79bf/downloadf4b988e91d2e47860392517dd1495fc0MD54TEXTConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdf.txtConvexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection.pdf.txttext/plain2154https://repositorio.cuc.edu.co/bitstreams/d30b3576-19af-4a2a-9bf9-ce55a25b1a2f/downloadd677dbe25dc6a207d29e5a6a0390cfe5MD5511323/7691oai:repositorio.cuc.edu.co:11323/76912024-09-17 12:43:45.199http://creativecommons.org/publicdomain/zero/1.0/CC0 1.0 Universalopen.accesshttps://repositorio.cuc.edu.coRepositorio de la Universidad de la Costa CUCrepdigital@cuc.edu.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