The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA
Q1
- Autores:
-
Contreras Ortiz, Natalia
Rodríguez García, Teresa
Quintanilla, Sonia
Bernal Villegas, Jaime
Madriñán, Santiago
Gómez, Alberto
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2019
- Institución:
- Pontificia Universidad Javeriana
- Repositorio:
- Repositorio Universidad Javeriana
- Idioma:
- eng
- OAI Identifier:
- oai:repository.javeriana.edu.co:10554/65319
- Acceso en línea:
- https://search-ebscohost-com.ezproxy.javeriana.edu.co/login.aspx?direct=true&AuthType=sso&db=edsjsr&AN=edsjsr.26862065&lang=es&site=eds-live&scope=site&custid=s6670599
http://hdl.handle.net/10554/65319
https://doi.org/10.1002/tax.12067
- Palabra clave:
- Herbarium DNA amplification
Molecular phylogenetics
Oncidium ornithorhynchum
Oncidium sotoanum
South America
- Rights
- License
- Atribución-NoComercial 4.0 Internacional
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| dc.title.spa.fl_str_mv |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| title |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| spellingShingle |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA Herbarium DNA amplification Molecular phylogenetics Oncidium ornithorhynchum Oncidium sotoanum South America |
| title_short |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| title_full |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| title_fullStr |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| title_full_unstemmed |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| title_sort |
The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA |
| dc.creator.fl_str_mv |
Contreras Ortiz, Natalia Rodríguez García, Teresa Quintanilla, Sonia Bernal Villegas, Jaime Madriñán, Santiago Gómez, Alberto |
| dc.contributor.author.none.fl_str_mv |
Contreras Ortiz, Natalia Rodríguez García, Teresa Quintanilla, Sonia Bernal Villegas, Jaime Madriñán, Santiago Gómez, Alberto |
| dc.contributor.corporatename.spa.fl_str_mv |
Pontificia Universidad Javeriana. Facultad de Medicina. Instituto de Genética Humana. Grupo de investigación Instituto de Genética Humana |
| dc.contributor.javerianateacher.none.fl_str_mv |
Gómez, Alberto |
| dc.subject.keyword.spa.fl_str_mv |
Herbarium DNA amplification Molecular phylogenetics Oncidium ornithorhynchum Oncidium sotoanum South America |
| topic |
Herbarium DNA amplification Molecular phylogenetics Oncidium ornithorhynchum Oncidium sotoanum South America |
| description |
Q1 |
| publishDate |
2019 |
| dc.date.created.none.fl_str_mv |
2019-08-14 |
| dc.date.accessioned.none.fl_str_mv |
2023-08-28T15:07:28Z |
| dc.date.available.none.fl_str_mv |
2023-08-28T15:07:28Z |
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Artículo de revista |
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http://purl.org/coar/resource_type/c_6501 |
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http://purl.org/coar/resource_type/c_6501 |
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| dc.identifier.issn.spa.fl_str_mv |
0040-0262 / 1996-8175 (Electrónico) |
| dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10554/65319 |
| dc.identifier.doi.spa.fl_str_mv |
https://doi.org/10.1002/tax.12067 |
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instname:Pontificia Universidad Javeriana |
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reponame:Repositorio Institucional - Pontificia Universidad Javeriana |
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0040-0262 / 1996-8175 (Electrónico) instname:Pontificia Universidad Javeriana reponame:Repositorio Institucional - Pontificia Universidad Javeriana repourl:https://repository.javeriana.edu.co |
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eng |
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eng |
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471 |
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480 |
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Taxon |
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68 |
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3 |
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Atribución-NoComercial 4.0 Internacional |
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América Latina |
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Atribución-NoComercial 4.0 Internacionalhttp://creativecommons.org/licenses/by-nc/4.0/http://purl.org/coar/access_right/c_abf2Contreras Ortiz, NataliaRodríguez García, TeresaQuintanilla, SoniaBernal Villegas, JaimeMadriñán, SantiagoGómez, AlbertoPontificia Universidad Javeriana. Facultad de Medicina. Instituto de Genética Humana. Grupo de investigación Instituto de Genética HumanaGómez, AlbertoAmérica Latina2023-08-28T15:07:28Z2023-08-28T15:07:28Z2019-08-14https://search-ebscohost-com.ezproxy.javeriana.edu.co/login.aspx?direct=true&AuthType=sso&db=edsjsr&AN=edsjsr.26862065&lang=es&site=eds-live&scope=site&custid=s66705990040-0262 / 1996-8175 (Electrónico)http://hdl.handle.net/10554/65319https://doi.org/10.1002/tax.12067instname:Pontificia Universidad Javerianareponame:Repositorio Institucional - Pontificia Universidad Javerianarepourl:https://repository.javeriana.edu.coPDFapplication/pdfengThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNAArtículo de revistahttp://purl.org/coar/resource_type/c_6501Q1Q1Oncidium ornithorhynchum, an epiphytic orchid characterized by erect, pyramidal inflorescences and small yellow flowers, is found in the northern Andes. However, according to the protologue, the type was collected in Mexico during Humboldt and Bonpland's American expedition (1800–1804). To clarify this problem, we extracted DNA from the ancient holotype. Short-range PCRs for plastid (matK-trnK, trnH-psbA, ycf1) and nuclear (nrITS) markers were established and used to infer its phylogenetic placement with several related Central American and Andean orchid species. This provided well-supported and close relationships of the holotype with other North Andean orchids, proving that the locus classicus was confounded. Also O. sotoanum from Mexico, with which O. ornithorhynchum has often been confused, was only distantly related.https://orcid.org/0000-0002-6253-8223https://orcid.org/0000-0002-4726-1035https://orcid.org/0000-0002-5592-3844Revista Internacional - IndexadaA1NoHerbarium DNA amplificationMolecular phylogeneticsOncidium ornithorhynchumOncidium sotoanumSouth America471480Taxon683ORIGINALThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA.pdfThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA.pdfArtículoapplication/pdf1296151http://repository.javeriana.edu.co/bitstream/10554/65319/1/The%20origin%20of%20Humboldt%20and%20Bonpland%27s%20holotype%20of%20Oncidium%20ornithorhynchum%2c%20clarified%20using%20%2b200-year-old%20DNA.pdfd2903783f63145e6232f37c7b9753847MD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-82603http://repository.javeriana.edu.co/bitstream/10554/65319/2/license.txt2070d280cc89439d983d9eee1b17df53MD52open accessTHUMBNAILThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA.pdf.jpgThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA.pdf.jpgIM Thumbnailimage/jpeg10523http://repository.javeriana.edu.co/bitstream/10554/65319/3/The%20origin%20of%20Humboldt%20and%20Bonpland%27s%20holotype%20of%20Oncidium%20ornithorhynchum%2c%20clarified%20using%20%2b200-year-old%20DNA.pdf.jpg889d526594987acc6d23d1a97fb8f36cMD53open access10554/65319oai:repository.javeriana.edu.co:10554/653192023-08-30 03:07:06.85Repositorio Institucional - Pontificia Universidad Javerianarepositorio@javeriana.edu.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 |