How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes

Los paisajes urbanos son cada vez más importantes debido al crecimiento acelerado de la población y al aumento de la urbanización. Los ecosistemas urbanos sirven de hogar a diversas comunidades de plantas y hongos. Sin embargo, los estudios que se centran en la diversidad y estructura de las comunid...

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Tipo de recurso:
Fecha de publicación:
2021
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/32397
Acceso en línea:
https://doi.org/10.48713/10336_32397
https://repository.urosario.edu.co/handle/10336/32397
Palabra clave:
Hongos ectomicorrízicos
Quercus humboldtii Bonpl
Estructura de la comunidad
Comunidades rurales vs urbanas
Estudios de la diversidad y estructura de las comunidades biológicas de hongos en ecosistemas urbanos
Análisis comparativo de variedad biológica de los Hongos Ectomicorrízicos en comunidades rurales vs urbanas
Ciencias botánicas
Ectomycorrhizal fungi
Quercus humboldtii Bonpl.
Community structure
Rural vs Urban communities
Studies of the diversity and structure of the biological communities of fungi in urban ecosystems
Comparative analysis of the biological variety of Ectomycorrhizal Fungi in rural vs urban communities
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License
Atribución-NoComercial-SinDerivadas 2.5 Colombia
id EDOCUR2_d7f6f66e4e58b0d60207b1d3d05b4f54
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network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
dc.title.es.fl_str_mv How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
dc.title.TranslatedTitle.es.fl_str_mv Cómo las comunidades ectomicorrízicas varían de ecosistemas naturales a urbanos: Quercus humboldtii como caso de estudio en los Andes tropicales
title How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
spellingShingle How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
Hongos ectomicorrízicos
Quercus humboldtii Bonpl
Estructura de la comunidad
Comunidades rurales vs urbanas
Estudios de la diversidad y estructura de las comunidades biológicas de hongos en ecosistemas urbanos
Análisis comparativo de variedad biológica de los Hongos Ectomicorrízicos en comunidades rurales vs urbanas
Ciencias botánicas
Ectomycorrhizal fungi
Quercus humboldtii Bonpl.
Community structure
Rural vs Urban communities
Studies of the diversity and structure of the biological communities of fungi in urban ecosystems
Comparative analysis of the biological variety of Ectomycorrhizal Fungi in rural vs urban communities
title_short How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
title_full How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
title_fullStr How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
title_full_unstemmed How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
title_sort How ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical Andes
dc.contributor.advisor.none.fl_str_mv Corrales Osorio, Adriana
dc.subject.es.fl_str_mv Hongos ectomicorrízicos
Quercus humboldtii Bonpl
Estructura de la comunidad
Comunidades rurales vs urbanas
Estudios de la diversidad y estructura de las comunidades biológicas de hongos en ecosistemas urbanos
Análisis comparativo de variedad biológica de los Hongos Ectomicorrízicos en comunidades rurales vs urbanas
topic Hongos ectomicorrízicos
Quercus humboldtii Bonpl
Estructura de la comunidad
Comunidades rurales vs urbanas
Estudios de la diversidad y estructura de las comunidades biológicas de hongos en ecosistemas urbanos
Análisis comparativo de variedad biológica de los Hongos Ectomicorrízicos en comunidades rurales vs urbanas
Ciencias botánicas
Ectomycorrhizal fungi
Quercus humboldtii Bonpl.
Community structure
Rural vs Urban communities
Studies of the diversity and structure of the biological communities of fungi in urban ecosystems
Comparative analysis of the biological variety of Ectomycorrhizal Fungi in rural vs urban communities
dc.subject.ddc.es.fl_str_mv Ciencias botánicas
dc.subject.keyword.es.fl_str_mv Ectomycorrhizal fungi
Quercus humboldtii Bonpl.
Community structure
Rural vs Urban communities
Studies of the diversity and structure of the biological communities of fungi in urban ecosystems
Comparative analysis of the biological variety of Ectomycorrhizal Fungi in rural vs urban communities
description Los paisajes urbanos son cada vez más importantes debido al crecimiento acelerado de la población y al aumento de la urbanización. Los ecosistemas urbanos sirven de hogar a diversas comunidades de plantas y hongos. Sin embargo, los estudios que se centran en la diversidad y estructura de las comunidades biológicas son poco comunes en este hábitat. En Colombia, Quercus humboldtii Bonpl. es una especie ectomicorrízica conspicua presente en los bosques montanos tropicales que alberga una gran diversidad de hongos ectomicorrízicos en sus raíces. Quercus humboldtii se usa comúnmente como árbol urbano en Bogotá, pero las comunidades ectomicorrízicas de esta especie aún no han sido estudiadas en ecosistemas urbanos. Estudiamos cómo las comunidades de hongos ectomicorrízicos asociadas con este árbol cambian entre ecosistemas naturales y urbanos. Se muestrearon raíces de 24 árboles en dos sitios, Reserva Natural Chicaque (natural) y tres barrios de la ciudad de Bogotá (urbano). Utilizando la secuenciación de Illumina, la región ITS1 de todos los hongos asociados a la raíz se amplificó y analizó utilizando tuberías bioinformáticas tanto de OTU como de ASV. Encontramos 949 OTU en Bogotá y 514 OTU en Chicaque. No encontramos diferencias significativas en la riqueza de especies entre los sitios de Bogotá y Chicaque según el alfa de Fisher o las curvas de acumulación de especies. En las comunidades chicacas, los géneros más abundantes fueron Russula y Lactarius, mientras que Scleroderma, Hydnangium y Trechispora fueron muy abundantes en Bogotá. Un análisis de NMDS mostró que las muestras del sitio natural tenían una composición comunitaria significativamente diferente en comparación con los árboles urbanos. Nuestros resultados destacan la importancia de los árboles de Quercus como reservorios de diversidad fúngica ectomicorrízica en Bogotá.
publishDate 2021
dc.date.accessioned.none.fl_str_mv 2021-09-09T22:50:40Z
dc.date.available.none.fl_str_mv 2021-09-09T22:50:40Z
dc.date.created.none.fl_str_mv 2021-09-06
dc.type.eng.fl_str_mv bachelorThesis
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_7a1f
dc.type.document.es.fl_str_mv Artículo
dc.type.spa.spa.fl_str_mv Trabajo de grado
dc.identifier.doi.none.fl_str_mv https://doi.org/10.48713/10336_32397
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/32397
url https://doi.org/10.48713/10336_32397
https://repository.urosario.edu.co/handle/10336/32397
dc.language.iso.es.fl_str_mv eng
language eng
dc.rights.*.fl_str_mv Atribución-NoComercial-SinDerivadas 2.5 Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.es.fl_str_mv Abierto (Texto Completo)
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/2.5/co/
rights_invalid_str_mv Atribución-NoComercial-SinDerivadas 2.5 Colombia
Abierto (Texto Completo)
http://creativecommons.org/licenses/by-nc-nd/2.5/co/
http://purl.org/coar/access_right/c_abf2
dc.format.extent.es.fl_str_mv 24 pp.
dc.format.mimetype.es.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad del Rosario
dc.publisher.department.none.fl_str_mv Facultad de Ciencias Naturales
dc.publisher.program.none.fl_str_mv Biología
publisher.none.fl_str_mv Universidad del Rosario
institution Universidad del Rosario
dc.source.bibliographicCitation.es.fl_str_mv Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE general FASTA release for Fungi. UNITE Community. 10.15156/BIO/786368
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Corrales, A., Henkel, T. W., & Smith, M. E. (2018). Ectomycorrhizal associations in the tropics–biogeography, diversity patterns and ecosystem roles. New Phytologist, 220(4), 1076–1091.
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Desai, N. S., Wilson, A. W., Powers, J. S., Mueller, G. M., & Egerton-Warburton, L. M. (2016). Ectomycorrhizal diversity and community structure in stands of Quercus oleoides in the seasonally dry tropical forests of Costa Rica. Environmental Research Letters, 11(12), 125007.
García-Guzmán, O. M., Garibay-Orijel, R., Hernández, E., Arellano-Torres, E., & Oyama, K. (2017). Word-wide meta-analysis of Quercus forests ectomycorrhizal fungal diversity reveals southwestern Mexico as a hotspot. Mycorrhiza, 27(8), 811–822. https://doi.org/10.1007/s00572-017-0793-9
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Jumpponen, A. R. I., Jones, K. L., David Mattox, J., & Yaege, C. (2010). Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology, 19(s1), 41–53. https://doi.org/https://doi.org/10.1111/j.1365-294X.2009.04483.x
Karpati, A. S., Handel, S. N., Dighton, J., & Horton, T. R. (2011). Quercus rubra-associated ectomycorrhizal fungal communities of disturbed urban sites and mature forests. Mycorrhiza, 21(6), 537–547. https://doi.org/10.1007/s00572-011-0362-6
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spelling Corrales Osorio, Adriana43260206600Sanchez Tello, Juan DavidBiólogoPregradoFull time14f72141-57dd-4e53-b71d-7d08b0a1f1316002021-09-09T22:50:40Z2021-09-09T22:50:40Z2021-09-06Los paisajes urbanos son cada vez más importantes debido al crecimiento acelerado de la población y al aumento de la urbanización. Los ecosistemas urbanos sirven de hogar a diversas comunidades de plantas y hongos. Sin embargo, los estudios que se centran en la diversidad y estructura de las comunidades biológicas son poco comunes en este hábitat. En Colombia, Quercus humboldtii Bonpl. es una especie ectomicorrízica conspicua presente en los bosques montanos tropicales que alberga una gran diversidad de hongos ectomicorrízicos en sus raíces. Quercus humboldtii se usa comúnmente como árbol urbano en Bogotá, pero las comunidades ectomicorrízicas de esta especie aún no han sido estudiadas en ecosistemas urbanos. Estudiamos cómo las comunidades de hongos ectomicorrízicos asociadas con este árbol cambian entre ecosistemas naturales y urbanos. Se muestrearon raíces de 24 árboles en dos sitios, Reserva Natural Chicaque (natural) y tres barrios de la ciudad de Bogotá (urbano). Utilizando la secuenciación de Illumina, la región ITS1 de todos los hongos asociados a la raíz se amplificó y analizó utilizando tuberías bioinformáticas tanto de OTU como de ASV. Encontramos 949 OTU en Bogotá y 514 OTU en Chicaque. No encontramos diferencias significativas en la riqueza de especies entre los sitios de Bogotá y Chicaque según el alfa de Fisher o las curvas de acumulación de especies. En las comunidades chicacas, los géneros más abundantes fueron Russula y Lactarius, mientras que Scleroderma, Hydnangium y Trechispora fueron muy abundantes en Bogotá. Un análisis de NMDS mostró que las muestras del sitio natural tenían una composición comunitaria significativamente diferente en comparación con los árboles urbanos. Nuestros resultados destacan la importancia de los árboles de Quercus como reservorios de diversidad fúngica ectomicorrízica en Bogotá.Urban landscapes are becoming more important due to the accelerated population growth and increasing urbanization. Urban ecosystems serve as home to diverse plant and fungal communities. However, studies focusing on the diversity and structure of biological communities are uncommon in this habitat. In Colombia, Quercus humboldtii Bonpl. is a conspicuous ectomycorrhizal species present in tropical montane forests that hosts a high diversity of ectomycorrhizal fungi in its roots. Quercus humboldtii is commonly used as an urban tree in Bogotá, but the ectomycorrhizal communities of this species have not yet been studied in urban ecosystems. We studied how the ectomycorrhizal fungal communities associated with this tree change between natural and urban ecosystems. Roots of 24 trees were sampled in two sites, Chicaque Natural Reserve (natural) and three neighborhoods of Bogotá city (urban). Using Illumina sequencing, the ITS1 region of all root associated fungi was amplified and analyzed using both OTUs and ASVs bioinformatics pipelines. We found 949 OTUs in Bogotá and 514 OTUs in Chicaque. We didn’t find significant differences in the species richness between Bogotá and Chicaque sites based on Fisher’s alpha or species-accumulation curves. In Chicaque communities, the most abundant genera were Russula and Lactarius, while Scleroderma, Hydnangium, and Trechispora were highly abundant in Bogotá. An NMDS analysis showed that samples from the natural site had a significantly different community composition compared with urban trees. Our results highlight the importance of Quercus trees as reservoirs of ectomycorrhizal fungal diversity in Bogotá.24 pp.application/pdfBogotá, ColombiaParque Natural Montañas de Chicaque, Cundinamarca, Colombiahttps://doi.org/10.48713/10336_32397 https://repository.urosario.edu.co/handle/10336/32397engUniversidad del RosarioFacultad de Ciencias NaturalesBiologíaAtribución-NoComercial-SinDerivadas 2.5 ColombiaAbierto (Texto Completo)EL AUTOR, manifiesta que la obra objeto de la presente autorización es original y la realizó sin violar o usurpar derechos de autor de terceros, por lo tanto la obra es de exclusiva autoría y tiene la titularidad sobre la misma.http://creativecommons.org/licenses/by-nc-nd/2.5/co/http://purl.org/coar/access_right/c_abf2Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE general FASTA release for Fungi. UNITE Community. 10.15156/BIO/786368Aldrich, P. R., & Cavender-Bares, J. (2011). 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M., & Murphy, A. (2015). Plant physiology and development. Sunderland, MA: Sinauer Associates.Vargas N, Restrepo S. 2019. A checklist of Ectomycorrhizal Mushrooms associated to Quercus humboldtii in Colombia. En: Guerin-Laguette A, Moreno J, Flores R, Quiang F (eds). Mushrooms, humans and nature in a changing world: Perspectives from ecological, agricultural and social sciences. Springer NatureVasco-Palacios, A. M., Bahram, M., Boekhout, T., & Tedersoo, L. (2019). Carbon content and pH as important drivers of fungal community structure in three Amazon forests. Plant and Soil. https://doi.org/10.1007/s11104-019-04218-3Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naive bayesian classifier for rapid assignment of rrna sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261–5267. doi: 10.1128/AEM.00062-07Waring, B. G., Adams, R., Branco, S., & Powers, J. S. (2016). 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New Phytologist, 209(2), 845–854.instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURHongos ectomicorrízicosQuercus humboldtii BonplEstructura de la comunidadComunidades rurales vs urbanasEstudios de la diversidad y estructura de las comunidades biológicas de hongos en ecosistemas urbanosAnálisis comparativo de variedad biológica de los Hongos Ectomicorrízicos en comunidades rurales vs urbanasCiencias botánicas580600Ectomycorrhizal fungiQuercus humboldtii Bonpl.Community structureRural vs Urban communitiesStudies of the diversity and structure of the biological communities of fungi in urban ecosystemsComparative analysis of the biological variety of Ectomycorrhizal Fungi in rural vs urban communitiesHow ectomycorrhizal communities vary from natural to urban ecosystems: Quercus humboldtii as a study case in the tropical AndesCómo las comunidades ectomicorrízicas varían de ecosistemas naturales a urbanos: Quercus humboldtii como caso de estudio en los Andes tropicalesbachelorThesisArtículoTrabajo de gradohttp://purl.org/coar/resource_type/c_7a1fORIGINALSanchezTello-JuanDavid-2021.pdfSanchezTello-JuanDavid-2021.pdfArticulo principalapplication/pdf711845https://repository.urosario.edu.co/bitstreams/4269debd-f759-4522-a80e-d76f9271cfd7/downloadff39382caf19395c8c45155ec2e26ed1MD51SanchezTello-JuanDavid-1-2021.pdfSanchezTello-JuanDavid-1-2021.pdfMaterial suplementarioapplication/pdf675713https://repository.urosario.edu.co/bitstreams/0b781eb6-8e82-4163-8b41-18c359592906/download8ffeca5043dd7bd467a7da2f21d225a0MD52LICENSElicense.txtlicense.txttext/plain1475https://repository.urosario.edu.co/bitstreams/bdaeff4f-07a4-4e31-94af-8e7874f997fc/downloadfab9d9ed61d64f6ac005dee3306ae77eMD53CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; 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