Sequential classification system for recognition of malaria infection using peripheral blood cell images
Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a mach...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2020
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/22307
- Acceso en línea:
- https://doi.org/10.1136/jclinpath-2019-206419
https://repository.urosario.edu.co/handle/10336/22307
- Palabra clave:
- Erythrocyte
Image analysis
Malaria
Morphology
Peripheral blood
- Rights
- License
- Abierto (Texto Completo)
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oai:repository.urosario.edu.co:10336/22307 |
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5bb02144-2283-46c7-8e10-eebb0e795ff0-11146ea38-26f3-43fe-b3ea-904b27747297-167a052f9-ab33-4056-af24-f21c6951892a-107c53249-319f-4aa3-a271-782bcea6f537-1b63c34ab-e4fa-4c6f-afe4-2f90029b9426-177576fd3-64ae-4743-bed5-0276eaeeb202-12020-05-25T23:56:03Z2020-05-25T23:56:03Z2020Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a machine learning approach able to discriminate parasitised erythrocytes not only from normal, but also from other erythrocyte inclusions, such as Howell-Jolly and Pappenheimer bodies, basophilic stippling as well as platelets overlying red blood cells. Methods: A total of 15 660 erythrocyte images from 87 smears were segmented using histogram thresholding and watershed techniques, which allowed the extraction of 2852 colour and texture features. Dataset was split into a training and assessment sets. Training set was used to develop the whole system, in which several classification approaches were compared with obtain the most accurate recognition. Afterwards, the recognition system was evaluated with the assessment set, performing two steps: (1) classifying each individual cell image to assess the system's recognition ability and (2) analysing whole smears to obtain a malaria infection diagnosis. Results: The selection of the best classification approach resulted in a final sequential system with an accuracy of 97.7% for the six groups of red blood cell inclusions. The ability of the system to detect patients infected with malaria showed a sensitivity and specificity of 100% and 90%, respectively. Conclusions: The proposed method achieves a high diagnostic performance in the recognition of red blood cell infected with malaria, along with other frequent erythrocyte inclusions. © 2020 Author(s) (or their employer(s)). No commercial re-use. See rights and permissions. Published by BMJ.application/pdfhttps://doi.org/10.1136/jclinpath-2019-206419https://repository.urosario.edu.co/handle/10336/22307engBMJ Publishing GroupJournal of Clinical PathologyJournal of Clinical Pathology,(2020)https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082694014&doi=10.1136%2fjclinpath-2019-206419&partnerID=40&md5=516cf8e44b309dfaa4d4b9a4ae9841b3Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURErythrocyteImage analysisMalariaMorphologyPeripheral bloodSequential classification system for recognition of malaria infection using peripheral blood cell imagesarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Molina, AngelAlférez, SantiagoBoldú, LauraAcevedo, AndreaRodellar, JoséMerino, Anna10336/22307oai:repository.urosario.edu.co:10336/223072022-05-02 07:37:18.119623https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |
dc.title.spa.fl_str_mv |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
title |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
spellingShingle |
Sequential classification system for recognition of malaria infection using peripheral blood cell images Erythrocyte Image analysis Malaria Morphology Peripheral blood |
title_short |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
title_full |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
title_fullStr |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
title_full_unstemmed |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
title_sort |
Sequential classification system for recognition of malaria infection using peripheral blood cell images |
dc.subject.keyword.spa.fl_str_mv |
Erythrocyte Image analysis Malaria Morphology Peripheral blood |
topic |
Erythrocyte Image analysis Malaria Morphology Peripheral blood |
description |
Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a machine learning approach able to discriminate parasitised erythrocytes not only from normal, but also from other erythrocyte inclusions, such as Howell-Jolly and Pappenheimer bodies, basophilic stippling as well as platelets overlying red blood cells. Methods: A total of 15 660 erythrocyte images from 87 smears were segmented using histogram thresholding and watershed techniques, which allowed the extraction of 2852 colour and texture features. Dataset was split into a training and assessment sets. Training set was used to develop the whole system, in which several classification approaches were compared with obtain the most accurate recognition. Afterwards, the recognition system was evaluated with the assessment set, performing two steps: (1) classifying each individual cell image to assess the system's recognition ability and (2) analysing whole smears to obtain a malaria infection diagnosis. Results: The selection of the best classification approach resulted in a final sequential system with an accuracy of 97.7% for the six groups of red blood cell inclusions. The ability of the system to detect patients infected with malaria showed a sensitivity and specificity of 100% and 90%, respectively. Conclusions: The proposed method achieves a high diagnostic performance in the recognition of red blood cell infected with malaria, along with other frequent erythrocyte inclusions. © 2020 Author(s) (or their employer(s)). No commercial re-use. See rights and permissions. Published by BMJ. |
publishDate |
2020 |
dc.date.accessioned.none.fl_str_mv |
2020-05-25T23:56:03Z |
dc.date.available.none.fl_str_mv |
2020-05-25T23:56:03Z |
dc.date.created.spa.fl_str_mv |
2020 |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1136/jclinpath-2019-206419 |
dc.identifier.uri.none.fl_str_mv |
https://repository.urosario.edu.co/handle/10336/22307 |
url |
https://doi.org/10.1136/jclinpath-2019-206419 https://repository.urosario.edu.co/handle/10336/22307 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationTitle.none.fl_str_mv |
Journal of Clinical Pathology |
dc.relation.ispartof.spa.fl_str_mv |
Journal of Clinical Pathology,(2020) |
dc.relation.uri.spa.fl_str_mv |
https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082694014&doi=10.1136%2fjclinpath-2019-206419&partnerID=40&md5=516cf8e44b309dfaa4d4b9a4ae9841b3 |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.acceso.spa.fl_str_mv |
Abierto (Texto Completo) |
rights_invalid_str_mv |
Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
BMJ Publishing Group |
institution |
Universidad del Rosario |
dc.source.instname.spa.fl_str_mv |
instname:Universidad del Rosario |
dc.source.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional EdocUR |
repository.name.fl_str_mv |
Repositorio institucional EdocUR |
repository.mail.fl_str_mv |
edocur@urosario.edu.co |
_version_ |
1814167563568939008 |