Sequential classification system for recognition of malaria infection using peripheral blood cell images

Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a mach...

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Autores:
Tipo de recurso:
Fecha de publicación:
2020
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/22307
Acceso en línea:
https://doi.org/10.1136/jclinpath-2019-206419
https://repository.urosario.edu.co/handle/10336/22307
Palabra clave:
Erythrocyte
Image analysis
Malaria
Morphology
Peripheral blood
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Abierto (Texto Completo)
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network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
spelling 5bb02144-2283-46c7-8e10-eebb0e795ff0-11146ea38-26f3-43fe-b3ea-904b27747297-167a052f9-ab33-4056-af24-f21c6951892a-107c53249-319f-4aa3-a271-782bcea6f537-1b63c34ab-e4fa-4c6f-afe4-2f90029b9426-177576fd3-64ae-4743-bed5-0276eaeeb202-12020-05-25T23:56:03Z2020-05-25T23:56:03Z2020Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a machine learning approach able to discriminate parasitised erythrocytes not only from normal, but also from other erythrocyte inclusions, such as Howell-Jolly and Pappenheimer bodies, basophilic stippling as well as platelets overlying red blood cells. Methods: A total of 15 660 erythrocyte images from 87 smears were segmented using histogram thresholding and watershed techniques, which allowed the extraction of 2852 colour and texture features. Dataset was split into a training and assessment sets. Training set was used to develop the whole system, in which several classification approaches were compared with obtain the most accurate recognition. Afterwards, the recognition system was evaluated with the assessment set, performing two steps: (1) classifying each individual cell image to assess the system's recognition ability and (2) analysing whole smears to obtain a malaria infection diagnosis. Results: The selection of the best classification approach resulted in a final sequential system with an accuracy of 97.7% for the six groups of red blood cell inclusions. The ability of the system to detect patients infected with malaria showed a sensitivity and specificity of 100% and 90%, respectively. Conclusions: The proposed method achieves a high diagnostic performance in the recognition of red blood cell infected with malaria, along with other frequent erythrocyte inclusions. © 2020 Author(s) (or their employer(s)). No commercial re-use. See rights and permissions. Published by BMJ.application/pdfhttps://doi.org/10.1136/jclinpath-2019-206419https://repository.urosario.edu.co/handle/10336/22307engBMJ Publishing GroupJournal of Clinical PathologyJournal of Clinical Pathology,(2020)https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082694014&doi=10.1136%2fjclinpath-2019-206419&partnerID=40&md5=516cf8e44b309dfaa4d4b9a4ae9841b3Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURErythrocyteImage analysisMalariaMorphologyPeripheral bloodSequential classification system for recognition of malaria infection using peripheral blood cell imagesarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Molina, AngelAlférez, SantiagoBoldú, LauraAcevedo, AndreaRodellar, JoséMerino, Anna10336/22307oai:repository.urosario.edu.co:10336/223072022-05-02 07:37:18.119623https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv Sequential classification system for recognition of malaria infection using peripheral blood cell images
title Sequential classification system for recognition of malaria infection using peripheral blood cell images
spellingShingle Sequential classification system for recognition of malaria infection using peripheral blood cell images
Erythrocyte
Image analysis
Malaria
Morphology
Peripheral blood
title_short Sequential classification system for recognition of malaria infection using peripheral blood cell images
title_full Sequential classification system for recognition of malaria infection using peripheral blood cell images
title_fullStr Sequential classification system for recognition of malaria infection using peripheral blood cell images
title_full_unstemmed Sequential classification system for recognition of malaria infection using peripheral blood cell images
title_sort Sequential classification system for recognition of malaria infection using peripheral blood cell images
dc.subject.keyword.spa.fl_str_mv Erythrocyte
Image analysis
Malaria
Morphology
Peripheral blood
topic Erythrocyte
Image analysis
Malaria
Morphology
Peripheral blood
description Aims: Morphological recognition of red blood cells infected with malaria parasites is an important task in the laboratory practice. Nowadays, there is a lack of specific automated systems able to differentiate malaria with respect to other red blood cell inclusions. This study aims to develop a machine learning approach able to discriminate parasitised erythrocytes not only from normal, but also from other erythrocyte inclusions, such as Howell-Jolly and Pappenheimer bodies, basophilic stippling as well as platelets overlying red blood cells. Methods: A total of 15 660 erythrocyte images from 87 smears were segmented using histogram thresholding and watershed techniques, which allowed the extraction of 2852 colour and texture features. Dataset was split into a training and assessment sets. Training set was used to develop the whole system, in which several classification approaches were compared with obtain the most accurate recognition. Afterwards, the recognition system was evaluated with the assessment set, performing two steps: (1) classifying each individual cell image to assess the system's recognition ability and (2) analysing whole smears to obtain a malaria infection diagnosis. Results: The selection of the best classification approach resulted in a final sequential system with an accuracy of 97.7% for the six groups of red blood cell inclusions. The ability of the system to detect patients infected with malaria showed a sensitivity and specificity of 100% and 90%, respectively. Conclusions: The proposed method achieves a high diagnostic performance in the recognition of red blood cell infected with malaria, along with other frequent erythrocyte inclusions. © 2020 Author(s) (or their employer(s)). No commercial re-use. See rights and permissions. Published by BMJ.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2020-05-25T23:56:03Z
dc.date.available.none.fl_str_mv 2020-05-25T23:56:03Z
dc.date.created.spa.fl_str_mv 2020
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1136/jclinpath-2019-206419
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/22307
url https://doi.org/10.1136/jclinpath-2019-206419
https://repository.urosario.edu.co/handle/10336/22307
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationTitle.none.fl_str_mv Journal of Clinical Pathology
dc.relation.ispartof.spa.fl_str_mv Journal of Clinical Pathology,(2020)
dc.relation.uri.spa.fl_str_mv https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082694014&doi=10.1136%2fjclinpath-2019-206419&partnerID=40&md5=516cf8e44b309dfaa4d4b9a4ae9841b3
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.spa.fl_str_mv Abierto (Texto Completo)
rights_invalid_str_mv Abierto (Texto Completo)
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv BMJ Publishing Group
institution Universidad del Rosario
dc.source.instname.spa.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.spa.fl_str_mv reponame:Repositorio Institucional EdocUR
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
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