Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations

Trypanosoma cruzi is the causative agent of American trypanosomiasis, a complex zoonotic disease that affects more than 10 million people in the Americas. Strains of this parasite possess a significant amount of genetic variability and hence can be divided into at least six discrete typing units (DT...

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Tipo de recurso:
Fecha de publicación:
2013
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/27183
Acceso en línea:
https://doi.org/10.1016/j.mimet.2012.11.002
https://repository.urosario.edu.co/handle/10336/27183
Palabra clave:
Multiclonality
Chagas disease
Trypanosoma cruzi
Aneuploidy
Infrapopulation
Superinfection
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License
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id EDOCUR2_a6f9a198e47659c0c4772054d06f402b
oai_identifier_str oai:repository.urosario.edu.co:10336/27183
network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
spelling 1011716118600b503d44e-fccb-4030-bf00-8f384569fe593f9a81d4-28d2-4d67-90db-fa975f5c9cdfa34b10e4-f719-4e6a-9d4f-0717561679cc7975dd89-a585-459b-8064-ece904ffa6ebfe062efa-2c45-40ad-9076-805a8d1e00ac2020-08-19T14:41:16Z2020-08-19T14:41:16Z2013-02-15Trypanosoma cruzi is the causative agent of American trypanosomiasis, a complex zoonotic disease that affects more than 10 million people in the Americas. Strains of this parasite possess a significant amount of genetic variability and hence can be divided into at least six discrete typing units (DTUs). The life cycle of this protist suggests that multiclonal infections may emerge due to the likelihood of contact of triatomine insects with more than 100 mammal species. To date, there have been a few studies on but no consensus regarding standardised methodologies to identify multiclonal infections caused by this parasite. Hence, the aim of this study was to develop and validate a limiting dilution assay (LDA) to identify multiclonal infections in T. cruzi populations by comparing the feasibility and reliability of this method with the widely applied solid phase blood agar (SPBA) methodology. We cloned reference strains belonging to three independent genotypes (TcI, TcII, and TcIV) and mixed infections (TcI + TcII) using LDA and SPBA; the comparison was conducted by calculating the feasibility and reliability of the methods employed. Additionally, we implemented LDA in strains recently isolated from Homo sapiens, Rhodnius prolixus, Triatoma venosa, Panstrongylus geniculatus, Tamandua tetradactyla, Rattus rattus, Didelphis marsupialis and Dasypus novemcinctus, with the aim of resolving multiclonal infections using molecular characterization employing SL-IR (spliced leader intergenic region of mini-exon gene), the 24S? rDNA gene and microsatellite loci. The results reported herein demonstrate that LDA is an optimal methodology to distinguish T. cruzi subpopulations based on microsatellite markers by showing the absence of multiple peaks within a single locus. Conversely, SPBA showed patterns of multiple peaks within a single locus suggesting multiclonal events. The biological consequences of these results and the debate between multiclonality and aneuploidy are discussed.application/pdfhttps://doi.org/10.1016/j.mimet.2012.11.002ISSN: 0167-7012EISSN: 1872-8359https://repository.urosario.edu.co/handle/10336/27183engElsevier225No. 2220Journal of Microbiological MethodsVol. 92Journal of Microbiological Methods, ISSN: 0167-7012;EISSN: 1872-8359, Vol.92, No.2(2013); pp. 220-225https://www.sciencedirect.com/science/article/pii/S0167701212003491Restringido (Acceso a grupos específicos)http://purl.org/coar/access_right/c_16ecJournal of Microbiological Methodsinstname:Universidad del Rosarioreponame:Repositorio Institucional EdocURMulticlonalityChagas diseaseTrypanosoma cruziAneuploidyInfrapopulationSuperinfectionValidation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populationsValidación de un ensayo de dilución limitante (LDA) distribuido por Poisson para una resolución rápida y precisa de infecciones multiclonales en poblaciones naturales de Trypanosoma cruziarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Ramírez, Juan DavidHerrera, ClaudiaBogotá, YizethDuque, María ClaraSuárez-Rivillas, AlejandroGuhl, Felipe10336/27183oai:repository.urosario.edu.co:10336/271832022-05-02 07:37:16.553456https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
dc.title.TranslatedTitle.spa.fl_str_mv Validación de un ensayo de dilución limitante (LDA) distribuido por Poisson para una resolución rápida y precisa de infecciones multiclonales en poblaciones naturales de Trypanosoma cruzi
title Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
spellingShingle Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
Multiclonality
Chagas disease
Trypanosoma cruzi
Aneuploidy
Infrapopulation
Superinfection
title_short Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
title_full Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
title_fullStr Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
title_full_unstemmed Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
title_sort Validation of a poisson-distributed limiting dilution assay (LDA) for a rapid and accurate resolution of multiclonal infections in natural Trypanosoma cruzi populations
dc.subject.keyword.spa.fl_str_mv Multiclonality
Chagas disease
Trypanosoma cruzi
Aneuploidy
Infrapopulation
Superinfection
topic Multiclonality
Chagas disease
Trypanosoma cruzi
Aneuploidy
Infrapopulation
Superinfection
description Trypanosoma cruzi is the causative agent of American trypanosomiasis, a complex zoonotic disease that affects more than 10 million people in the Americas. Strains of this parasite possess a significant amount of genetic variability and hence can be divided into at least six discrete typing units (DTUs). The life cycle of this protist suggests that multiclonal infections may emerge due to the likelihood of contact of triatomine insects with more than 100 mammal species. To date, there have been a few studies on but no consensus regarding standardised methodologies to identify multiclonal infections caused by this parasite. Hence, the aim of this study was to develop and validate a limiting dilution assay (LDA) to identify multiclonal infections in T. cruzi populations by comparing the feasibility and reliability of this method with the widely applied solid phase blood agar (SPBA) methodology. We cloned reference strains belonging to three independent genotypes (TcI, TcII, and TcIV) and mixed infections (TcI + TcII) using LDA and SPBA; the comparison was conducted by calculating the feasibility and reliability of the methods employed. Additionally, we implemented LDA in strains recently isolated from Homo sapiens, Rhodnius prolixus, Triatoma venosa, Panstrongylus geniculatus, Tamandua tetradactyla, Rattus rattus, Didelphis marsupialis and Dasypus novemcinctus, with the aim of resolving multiclonal infections using molecular characterization employing SL-IR (spliced leader intergenic region of mini-exon gene), the 24S? rDNA gene and microsatellite loci. The results reported herein demonstrate that LDA is an optimal methodology to distinguish T. cruzi subpopulations based on microsatellite markers by showing the absence of multiple peaks within a single locus. Conversely, SPBA showed patterns of multiple peaks within a single locus suggesting multiclonal events. The biological consequences of these results and the debate between multiclonality and aneuploidy are discussed.
publishDate 2013
dc.date.created.spa.fl_str_mv 2013-02-15
dc.date.accessioned.none.fl_str_mv 2020-08-19T14:41:16Z
dc.date.available.none.fl_str_mv 2020-08-19T14:41:16Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1016/j.mimet.2012.11.002
dc.identifier.issn.none.fl_str_mv ISSN: 0167-7012
EISSN: 1872-8359
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/27183
url https://doi.org/10.1016/j.mimet.2012.11.002
https://repository.urosario.edu.co/handle/10336/27183
identifier_str_mv ISSN: 0167-7012
EISSN: 1872-8359
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationEndPage.none.fl_str_mv 225
dc.relation.citationIssue.none.fl_str_mv No. 2
dc.relation.citationStartPage.none.fl_str_mv 220
dc.relation.citationTitle.none.fl_str_mv Journal of Microbiological Methods
dc.relation.citationVolume.none.fl_str_mv Vol. 92
dc.relation.ispartof.spa.fl_str_mv Journal of Microbiological Methods, ISSN: 0167-7012;EISSN: 1872-8359, Vol.92, No.2(2013); pp. 220-225
dc.relation.uri.spa.fl_str_mv https://www.sciencedirect.com/science/article/pii/S0167701212003491
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_16ec
dc.rights.acceso.spa.fl_str_mv Restringido (Acceso a grupos específicos)
rights_invalid_str_mv Restringido (Acceso a grupos específicos)
http://purl.org/coar/access_right/c_16ec
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Elsevier
dc.source.spa.fl_str_mv Journal of Microbiological Methods
institution Universidad del Rosario
dc.source.instname.none.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.none.fl_str_mv reponame:Repositorio Institucional EdocUR
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
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