Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama

En el presente estudio se describen Russula floriformis y R. symphoniae como dos nuevas especies hermanas de la subsección Russula Substriatinae del bosque montano presente en Colombia y Panamá asociadas con árboles Quercus spp. y Oreomunnea spp., respectivamente.Las condiciones ambientales en las d...

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Fecha de publicación:: 2020

Institución:: Universidad del Rosario

Repositorio:: Repositorio EdocUR - U. Rosario

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network_acronym_str	EDOCUR2
network_name_str	Repositorio EdocUR - U. Rosario
repository_id_str
dc.title.spa.fl_str_mv	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
dc.title.TranslatedTitle.spa.fl_str_mv	Dos nuevas especies tropicales de Russula asociadas con Quercus muestran evidencia de diversificación en el Istmo de Panamá
title	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
spellingShingle	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama America Bosque montano tropical Coevolución Diversidad Ectomicorriza Especies cripticas Fagaceae Juglandaceae Botánica Cryptic species Coevolution Diversity Ectomycorrhiza Tropical mountain forest America Fagaceae Juglandaceae Micología Genética de hongos Fisiología de los hongos Russula-Variación (Biología)
title_short	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
title_full	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
title_fullStr	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
title_full_unstemmed	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
title_sort	Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama
dc.contributor.advisor.none.fl_str_mv	Adamčík, Slavomir Corrales Osorio, Adriana
dc.contributor.none.fl_str_mv	Adamčíková, Katarína Hampe, Felix Caboň, Miroslav Manz, Cathrin Ovrebo, Clark Pipenbring, Meike
dc.subject.spa.fl_str_mv	America Bosque montano tropical Coevolución Diversidad Ectomicorriza Especies cripticas Fagaceae Juglandaceae
topic	America Bosque montano tropical Coevolución Diversidad Ectomicorriza Especies cripticas Fagaceae Juglandaceae Botánica Cryptic species Coevolution Diversity Ectomycorrhiza Tropical mountain forest America Fagaceae Juglandaceae Micología Genética de hongos Fisiología de los hongos Russula-Variación (Biología)
dc.subject.ddc.spa.fl_str_mv	Botánica
dc.subject.keyword.spa.fl_str_mv	Cryptic species Coevolution Diversity Ectomycorrhiza Tropical mountain forest America Fagaceae Juglandaceae
dc.subject.lemb.spa.fl_str_mv	Micología Genética de hongos Fisiología de los hongos Russula-Variación (Biología)
description	En el presente estudio se describen Russula floriformis y R. symphoniae como dos nuevas especies hermanas de la subsección Russula Substriatinae del bosque montano presente en Colombia y Panamá asociadas con árboles Quercus spp. y Oreomunnea spp., respectivamente.Las condiciones ambientales en las dos áreas de estudio son muy similares y una similitud de secuencia ITS superior al 99% con solo 3 posiciones diferentes indican que estas especies están estrechamente relacionadas y son casi crípticas. Observaciones detalladas de estructuras microscópicas y análisis de multi-locus revelaron más caracteres morfológicos y moleculares que distinguen las colecciones de Colombia y Panamá, resultadon en las especies R. floriformis y R. symphoniae. La distribución espacial y la proximidad filogenética de las especies de Russula y la distribución de Quercus, sugiere su especiación como resultado de la migración, la adaptación y el aislamiento climático a través del Istmo de Panamá de la especie durante los eventos del Plioceno y el Pleistoceno. Basado en esto, hipotetizamos que esto podría ser evidencia de coevolución entre Russula y Quercus. El análisis de los datos de secuencia ITS disponibles públicamente sugiere que hay más especies adaptadas localmente de este linaje en América Central y del Norte.
publishDate	2020
dc.date.accessioned.none.fl_str_mv	2020-02-12T19:42:35Z
dc.date.available.none.fl_str_mv	2020-02-12T19:42:35Z
dc.date.created.none.fl_str_mv	2020-01-24
dc.type.eng.fl_str_mv	bachelorThesis
dc.type.coar.fl_str_mv	http://purl.org/coar/resource_type/c_7a1f
dc.type.document.spa.fl_str_mv	Trabajo de grado
dc.type.spa.spa.fl_str_mv	Trabajo de grado
dc.identifier.doi.none.fl_str_mv	https://doi.org/10.48713/10336_20860
dc.identifier.uri.none.fl_str_mv	https://repository.urosario.edu.co/handle/10336/20860
url	https://doi.org/10.48713/10336_20860 https://repository.urosario.edu.co/handle/10336/20860
dc.language.iso.spa.fl_str_mv	eng
language	eng
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rights_invalid_str_mv	Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv	application/pdf
dc.publisher.spa.fl_str_mv	Universidad del Rosario
dc.publisher.department.spa.fl_str_mv	Facultad de Ciencias Naturales y Matemáticas
dc.publisher.program.spa.fl_str_mv	Biología
institution	Universidad del Rosario
dc.source.bibliographicCitation.spa.fl_str_mv	Adamčík S, Jančovičová S, & Buyck B. 2018. The Russulas Described by Charles Horton Peck. Cryptogamie Mycologie, 39: 3–108. Adamčík S, Looney B, Caboň M, Jančovičová S, Adamčíková K, Avis PG. Barajas M, Bhatt RP, Corrales A, Das K, Hampe F, Ghosh A, Gates G, Kälvläinen V, Khalid AN, Kiran M, De Lange R, Lee H, Lim YW, Kong A, Manz C, Ovrebo C, Saba M, Taipale T, Verbeken A, Wisitrassameewong K, Buyck B. 2019. The quest for a globally comprehensible Russula language. Fungal Diversity. Adamčík S, Slovák M, Eberhardt U, Ronikier A, Jairus T, Hampe F, Verbeken A (2016b) Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex. Mycologia 108:716–730. https://doi.org/10.3852/15-194 Andersen KM, Endara MJ, Turner BL, Dalling JW. 2012. Trait-based community assembly of understory palms along a soil nutrient gradient in a lower montane tropical forest. Oecologia 168:519–531 Ávila-de Navia SL, Estupiñan-Torres SM. 2013. Calidad sanitaria del agua del Parque Natural Chicaque. NOVA 11:45-51. Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli, A. 2015. Biological evidence supports and early and complex emergence of the Isthmus of Panama. Proceeding of the National Academy of Sciences 112: 6110-6115. Badotti F, Silva de Oliveira F, Garcia CF, Vaz AMB, Fonseca PLC, Nahum LA, Oliveira G, Góes-Neto A. 2017. Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi). BMC Microbiology 17: 42. Bazzicalupo AL, Buyck B, Saar I, Vauras J, Carmean D, Berbee ML. 2017. Troubles with mycorrhizal mushroom identification where morphological differentiation lags behind barcode sequence divergence. Taxon 66(4):791–810. Becerra G, Zak M. 2011. The Ectomycorrhizal Symbiosis in South America: Morphology, Colonization, and Diversity. In: Baptista P, Tavares RM, Lino-Neto T. 2011. 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Franco-Molano AE, Corrales A, Vasco-Palacios AM. 2010. Macrogundi of Colombia II. Checklist of the species of Agaricales, Boletales, Cantharellales and Russulales (Agaricomycetes, Basidiomycota). Actualidad Biologicas 32: 89-114. García-Guzmán OM, Garibay-Orijel R, Hernández E, Arellano-Torres E, & Oyama K. 2017. Word-wide meta-analysis of Quercus forests ectomycorrhizal fungal diversity reveals southwestern Mexico as a hotspot. Mycorrhiza 27: 811–822. Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology 2:113–118. González CE, Jarvis A, Palacio JD. 2006. Biogeography of the Colombian oak, Quercus humboldtii Bonpl: geographical distribution and their climatic adaptation. International Centre for Tropical Agriculture (CIAT)/Museo de Historia Natural, Universidad Del Cauca.10p. Hall T. 2005. BioEdit: Biological Sequence Alignment Editor. http://www.mbio.ncsu.edu/bioedit/bioedit.html Haug I, Weiß M, Homeier J, Oberwinkler F, Kottke I. 2005. Russulaceae and Thelephoraceae form ectomycorrhizas with members of the Nyctaginaceae (Caryophyllales) in the tropical mountain rain forest of southern Ecuador. New Phytologist, 165: 923–936. Hynes MM, Smith ME, Zasoski RJ, Bledsoe CS. 2010. A molecular survey of ectomycorrhizal hyphae in a California Quercus–Pinus woodland. Mycorrhiza 20: 265–274 Herrera F, Manchester SR, Koll R, Jaramillo C. 2014. Fruits of Oreomunnea (Juglandaceae) in the early Miocene of Panama. In: Stevens WD, Montiel OM, Raven PH, Paleobotany and Biogeography: A Festschrift for Alan Graham in His 80th Year, 124–133. St Louis. Missouri Botanical Garden Press. Hooghiemstra H. 2006. Immigration of Oak into Northern South America: A Paleo-Ecological Document. In: Kappelle M. Ecology and Conservation of Neotropical Montane Oak Forests. Berlin, Germany. Springer. p 17–28. Jaramillo C. 2018. Evolution of the Isthmus of Panama: Biological, Paleoceanographic and Paleoclimatological Implications. In: Hoorn C, Perrigo A, Antonelli A, Mountains, Climate and Biodiversity. Hoboken, New Jersey. John Wiley & Sons. P 323-337. Katoh K., Standley D.M. 2013. MAFFT multiple sequence alignment software, version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780 Kearse M., Moir R., Wilson A., Stones-Havas S., Cheung M. et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649 Lanfear R., Calcott B., Ho S.Y., Guindon S., Lanfear R. et al. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29:1695–1701 Looney BP, Meidl P, Piatek MJ, Miettinen O, Martin FM, Matheny PB, Labbé JL. 2018. Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates. New Phytologist 218: 54–66. Looney BP, Ryberg M, Hampe F, Sánchez-García M, Matheny PB. 2016. Into and out of the tropics: Global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi. Molecular Ecology 25: 630–647. Manz C. 2019. Diversity assessment of the ectomycorrhizal genus Russula in tropical montane forests in Masterarbeit. Matheny PB .2005 Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol Phylogenet Evol 35:1–20. doi:10.1016/j.ympev.2004.11.014 Miller M.A., Pfeiffer W., Schwartz T. 2010 Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA pp 1 - 8. Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R (2000) Phylogenetic relationship of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49(2): 278–305. https://doi.org/10.1093/sysbio/49.2.278 Morehouse EA, James TY, Ganley ARD, Vilgalys R, Berger L, Murphy PJ, Longcore E. 2003 – Multilocus sequences typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology 12:395–403 Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson KH, Köljalg U. 2006. Taxonomic reliability of DNA sequences in public sequences databases: A fungal perspective. PLoS ONE 1: e59 Nixon KC. 2006. Global and Neotropical Distribution and Diversity of Oak (genus Quercus) and Oak Forests. In: Ecology and Conservation of Neotropical Montane Oak Forests. Berlin, Germany. Springer. p. 3–13. Ondrušková E, Jánošíková Z, Kádasi-Horáková M, Koltay A, Ostrovský R, Pažitný J, Adamčíková K. 2017 – Distribution and characterization of Dothistroma needle blight pathogens on Pinus mugo in Slovakia. European Journal of Plant Pathology 148(2):283–294. https://link.springer.com/article/10.1007/s10658-016-1088-2 Pastirčáková K, Adamčíková K, Pastirčák M, Zach P, Galko J, Kováč M, Laco J. 2018 – Two blue-stain fungi colonizing Scots pine (Pinus sylvestris) trees infested by bark beetles in Slovakia, Central Europe. Biologia 73(11):1053–1066. Rambaut A., Suchard M.A., Xie D., Drummond A.J. 2013. Tracer. Version 1.6. http://beast.bio.ed.ac.uk/software/tracer/ Rangel JO, Avella A. 2011. Oak forests of Quercus humboldtii in the Caribbean region and distribution patterns related with environmental factor in Colombia. Plant Biosystems 145: 186-198. Richard F, Millot S, Gardes M, Selosse M-A. 2005. 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Diversity and Distribution of Ectomycorrhizal Fungi from Amazonian Lowland White-sand Forests in Brazil and French Guiana. Biotropica 48: 90–100. Roy M, Vasco-Palacios A, Geml J, Buyck B, Delgat L, Giachini A, Grebenc T, Harrower, E, Kuhar F, Magnano A, Rinaldi A, Shimann H, Selosse MA, Sulzbacher MA, Warthchow F, Neves, M. A. 2017. The (re)discovery of ectomycorrhizal symbioses in Neotropical ecosystems sketched in Florianópolis. New Phytologist 214: 920–923. Silvestro D., Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Organismal Diversity and Evolution 12:335–337 Smith ME, Henkel TW, Aime CM, Fremier AK, Vilgalys R. 2011. Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest. New Phytologist 192: 699–712. Stamatakis A. 2008. The RAxML 7.0.4 manual. https://web.natur.cuni.cz/~vlada/moltax/RAxML-Manual.7.0.4.pdf Vasco-Palacios AM, Franco-Molano AE. 2013. Diversity of Colombian macrofungi (Ascomycota-Basidiomycota). Mycotaxon. 121:499 Wang J, Buyck B, Wang XH, Bau T. 2019. Visiting Russula (Russulaceae, Russulales) with samples from southwestern China finds one new subsection of R. subg. Heterophyllidia with two new species. Mycological Progress 18: 771–784. Wang Q, He XH, Guo L-D. 2012. Ectomycorrhizal fungus communities of Quercus liaotungensis Koidz of different ages in a northern China temperate forest. Mycorrhiza 22: 461–470 White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols: a guide to methods and applications. Academic Press, San Diego, pp 315–322 Wu Q, Mueller GM, Ovrebo CL. 1997. An index to Genera, Species and Infraspecific Taxa of Basidiomycete Fungi described by Rolf Singer. In: Mueller GM, Wu Q (eds) Mycological contributions of Rolf Singer: Field Itinerary, Index to New Taxa, and List of Publications. Fieldiana, Field Museam of Natural History, Chicago, Illinois, pp 90-93 Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13:134. Quercus L. in GBIF Secretariat (2019). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.org
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spelling	Adamčíková, KatarínaHampe, FelixCaboň, MiroslavManz, CathrinOvrebo, ClarkPipenbring, MeikeAdamčík, Slavomir06de3a4e-e6ff-45d1-bd2f-c8b80333fc32-1Corrales Osorio, Adriana43260206600Vera Castellanos, MichelleBiólogoFull time5692445e-69fa-4c55-b154-111386ec5baa6002020-02-12T19:42:35Z2020-02-12T19:42:35Z2020-01-24En el presente estudio se describen Russula floriformis y R. symphoniae como dos nuevas especies hermanas de la subsección Russula Substriatinae del bosque montano presente en Colombia y Panamá asociadas con árboles Quercus spp. y Oreomunnea spp., respectivamente.Las condiciones ambientales en las dos áreas de estudio son muy similares y una similitud de secuencia ITS superior al 99% con solo 3 posiciones diferentes indican que estas especies están estrechamente relacionadas y son casi crípticas. Observaciones detalladas de estructuras microscópicas y análisis de multi-locus revelaron más caracteres morfológicos y moleculares que distinguen las colecciones de Colombia y Panamá, resultadon en las especies R. floriformis y R. symphoniae. La distribución espacial y la proximidad filogenética de las especies de Russula y la distribución de Quercus, sugiere su especiación como resultado de la migración, la adaptación y el aislamiento climático a través del Istmo de Panamá de la especie durante los eventos del Plioceno y el Pleistoceno. Basado en esto, hipotetizamos que esto podría ser evidencia de coevolución entre Russula y Quercus. El análisis de los datos de secuencia ITS disponibles públicamente sugiere que hay más especies adaptadas localmente de este linaje en América Central y del Norte.Russula floriformis and R. symphoniae are described as two new sister species of Russula subsection Substriatinae from montane forest of Colombia and Panama and associated with Quercus and Oreomunnea trees. Very similar field environmental conditions and an ITS sequence similarity higher than 99% with only 3 different positions indicate that these species are closely related and nearly cryptic. Detailed observations of microscopic structures and analyses of more DNA loci revealed more morphological and molecular characters distinguishing collections of R. floriformis from Colombia and R. symphoniae from Panama. Spatial distribution and phylogenetic proximity of Russula species and their ectomycorrhizal host Quercus tree suggests their speciation as a result of migration, adaptation and climatic isolation across the Panama Isthmus of their host tree during the Pliocene and Pleistocene events. Then we hypothesize that this could be evidence of coevolution between Russula and Quercus. Analysis of publicly available ITS sequence data suggests that there are more locally adapted species of this lineage in Central and North America.2022-02-13 01:01:01: Script de automatizacion de embargos. info:eu-repo/date/embargoEnd/2022-02-12International Association for Plant TaxonomySlovak Academy of Scienceapplication/pdfhttps://doi.org/10.48713/10336_20860 https://repository.urosario.edu.co/handle/10336/20860engUniversidad del RosarioFacultad de Ciencias Naturales y MatemáticasBiologíaAbierto (Texto Completo)EL AUTOR, manifiesta que la obra objeto de la presente autorización es original y la realizó sin violar o usurpar derechos de autor de terceros, por lo tanto la obra es de exclusiva autoría y tiene la titularidad sobre la misma.http://purl.org/coar/access_right/c_abf2Adamčík S, Jančovičová S, & Buyck B. 2018. The Russulas Described by Charles Horton Peck. Cryptogamie Mycologie, 39: 3–108.Adamčík S, Looney B, Caboň M, Jančovičová S, Adamčíková K, Avis PG. 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In: Mueller GM, Wu Q (eds) Mycological contributions of Rolf Singer: Field Itinerary, Index to New Taxa, and List of Publications. Fieldiana, Field Museam of Natural History, Chicago, Illinois, pp 90-93Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13:134.Quercus L. in GBIF Secretariat (2019). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.orginstname:Universidad del Rosarioreponame:Repositorio Institucional EdocURAmericaBosque montano tropicalCoevoluciónDiversidadEctomicorrizaEspecies cripticasFagaceaeJuglandaceaeBotánica581600Cryptic speciesCoevolutionDiversityEctomycorrhizaTropical mountain forestAmericaFagaceaeJuglandaceaeMicologíaGenética de hongosFisiología de los hongosRussula-Variación (Biología)Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of PanamaDos nuevas especies tropicales de Russula asociadas con Quercus muestran evidencia de diversificación en el Istmo de PanamábachelorThesisTrabajo de gradoTrabajo de gradohttp://purl.org/coar/resource_type/c_7a1fORIGINALSupplementary material_1.pdfSupplementary material_1.pdfMaterial Suplementario 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Two new tropical Russula species associated with Quercus show evidence of diversification across the Isthmus of Panama

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