Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern

Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcI...

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Autores:
Tipo de recurso:
Fecha de publicación:
2012
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/28161
Acceso en línea:
https://doi.org/10.1016/j.meegid.2012.06.018
https://repository.urosario.edu.co/handle/10336/28161
Palabra clave:
Discrete typing units
Chagas disease
PCR-RFLP
Trypanosoma cruzi I
Genetic diversity
Genotypes
Rights
License
Restringido (Acceso a grupos específicos)
id EDOCUR2_7f7fba2badf5641c102b89b525430651
oai_identifier_str oai:repository.urosario.edu.co:10336/28161
network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
spelling 1011716118600a34b10e4-f719-4e6a-9d4f-0717561679cc3f09886f-3c2c-4bf8-8cb6-88a92b59853a5be23414-b773-4b9a-8b36-5f5e7f313f32fe062efa-2c45-40ad-9076-805a8d1e00ac2020-08-19T14:46:11Z2020-08-19T14:46:11Z2012-12Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcIV in low proportions. The aim of this work was to observe the genetic variability within TcI using a multilocus PCR-RFLP strategy. We analyzed 70 single-celled clones from triatomines, reservoirs and humans that were amplified and restricted via ten PCR-RFLPs targets across TcI genome, the restriction fragments were used to construct phylograms according to calculated genetic distances. We obtained five polymorphic targets (1f8, HSP60, HSP70, SAPA and H1) and the consensus tree constructed according to these regions allowed us to observe two well-defined groups with close association to the transmission cycles (domestic/peridomestic and sylvatic) of Chagas disease in Colombia. Our findings allowed us to corroborate the previous reported genotypes based on the intergenic region of mini-exon gene. More studies examining the genetic diversity among T. cruzi I populations must be conducted in order to obtain a better understanding in regions where this DTU is endemic.application/pdfhttps://doi.org/10.1016/j.meegid.2012.06.018ISSN: 1567-1348EISSN: 1567-7257https://repository.urosario.edu.co/handle/10336/28161engElsevier1750No. 81743Infection, Genetics and EvolutionVol. 12Infection, Genetics and Evolution, ISSN: 1567-1348;EISSN: 1567-7257, Vol.12, No.8 (2012); pp. 1743-1750https://www.sciencedirect.com/science/article/abs/pii/S1567134812002377?via%3DihubRestringido (Acceso a grupos específicos)http://purl.org/coar/access_right/c_16ecInfection, Genetics and Evolutioninstname:Universidad del Rosarioreponame:Repositorio Institucional EdocURDiscrete typing unitsChagas diseasePCR-RFLPTrypanosoma cruzi IGenetic diversityGenotypesMultilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation patternEl perfil multilocus PCR-RFLP en Trypanosoma cruzi I destaca un patrón de variación genética intraespecíficaarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Ramírez, Juan DavidDuque, María ClaraMontilla, MarlenyCucunubá, Zulma M.Guhl, Felipe10336/28161oai:repository.urosario.edu.co:10336/281612021-10-05 06:54:43.495https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
dc.title.TranslatedTitle.spa.fl_str_mv El perfil multilocus PCR-RFLP en Trypanosoma cruzi I destaca un patrón de variación genética intraespecífica
title Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
spellingShingle Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
Discrete typing units
Chagas disease
PCR-RFLP
Trypanosoma cruzi I
Genetic diversity
Genotypes
title_short Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
title_full Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
title_fullStr Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
title_full_unstemmed Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
title_sort Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
dc.subject.keyword.spa.fl_str_mv Discrete typing units
Chagas disease
PCR-RFLP
Trypanosoma cruzi I
Genetic diversity
Genotypes
topic Discrete typing units
Chagas disease
PCR-RFLP
Trypanosoma cruzi I
Genetic diversity
Genotypes
description Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcIV in low proportions. The aim of this work was to observe the genetic variability within TcI using a multilocus PCR-RFLP strategy. We analyzed 70 single-celled clones from triatomines, reservoirs and humans that were amplified and restricted via ten PCR-RFLPs targets across TcI genome, the restriction fragments were used to construct phylograms according to calculated genetic distances. We obtained five polymorphic targets (1f8, HSP60, HSP70, SAPA and H1) and the consensus tree constructed according to these regions allowed us to observe two well-defined groups with close association to the transmission cycles (domestic/peridomestic and sylvatic) of Chagas disease in Colombia. Our findings allowed us to corroborate the previous reported genotypes based on the intergenic region of mini-exon gene. More studies examining the genetic diversity among T. cruzi I populations must be conducted in order to obtain a better understanding in regions where this DTU is endemic.
publishDate 2012
dc.date.created.spa.fl_str_mv 2012-12
dc.date.accessioned.none.fl_str_mv 2020-08-19T14:46:11Z
dc.date.available.none.fl_str_mv 2020-08-19T14:46:11Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1016/j.meegid.2012.06.018
dc.identifier.issn.none.fl_str_mv ISSN: 1567-1348
EISSN: 1567-7257
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/28161
url https://doi.org/10.1016/j.meegid.2012.06.018
https://repository.urosario.edu.co/handle/10336/28161
identifier_str_mv ISSN: 1567-1348
EISSN: 1567-7257
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationEndPage.none.fl_str_mv 1750
dc.relation.citationIssue.none.fl_str_mv No. 8
dc.relation.citationStartPage.none.fl_str_mv 1743
dc.relation.citationTitle.none.fl_str_mv Infection, Genetics and Evolution
dc.relation.citationVolume.none.fl_str_mv Vol. 12
dc.relation.ispartof.spa.fl_str_mv Infection, Genetics and Evolution, ISSN: 1567-1348;EISSN: 1567-7257, Vol.12, No.8 (2012); pp. 1743-1750
dc.relation.uri.spa.fl_str_mv https://www.sciencedirect.com/science/article/abs/pii/S1567134812002377?via%3Dihub
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_16ec
dc.rights.acceso.spa.fl_str_mv Restringido (Acceso a grupos específicos)
rights_invalid_str_mv Restringido (Acceso a grupos específicos)
http://purl.org/coar/access_right/c_16ec
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Elsevier
dc.source.spa.fl_str_mv Infection, Genetics and Evolution
institution Universidad del Rosario
dc.source.instname.none.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.none.fl_str_mv reponame:Repositorio Institucional EdocUR
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
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