Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern
Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcI...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2012
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/28161
- Acceso en línea:
- https://doi.org/10.1016/j.meegid.2012.06.018
https://repository.urosario.edu.co/handle/10336/28161
- Palabra clave:
- Discrete typing units
Chagas disease
PCR-RFLP
Trypanosoma cruzi I
Genetic diversity
Genotypes
- Rights
- License
- Restringido (Acceso a grupos específicos)
id |
EDOCUR2_7f7fba2badf5641c102b89b525430651 |
---|---|
oai_identifier_str |
oai:repository.urosario.edu.co:10336/28161 |
network_acronym_str |
EDOCUR2 |
network_name_str |
Repositorio EdocUR - U. Rosario |
repository_id_str |
|
spelling |
1011716118600a34b10e4-f719-4e6a-9d4f-0717561679cc3f09886f-3c2c-4bf8-8cb6-88a92b59853a5be23414-b773-4b9a-8b36-5f5e7f313f32fe062efa-2c45-40ad-9076-805a8d1e00ac2020-08-19T14:46:11Z2020-08-19T14:46:11Z2012-12Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcIV in low proportions. The aim of this work was to observe the genetic variability within TcI using a multilocus PCR-RFLP strategy. We analyzed 70 single-celled clones from triatomines, reservoirs and humans that were amplified and restricted via ten PCR-RFLPs targets across TcI genome, the restriction fragments were used to construct phylograms according to calculated genetic distances. We obtained five polymorphic targets (1f8, HSP60, HSP70, SAPA and H1) and the consensus tree constructed according to these regions allowed us to observe two well-defined groups with close association to the transmission cycles (domestic/peridomestic and sylvatic) of Chagas disease in Colombia. Our findings allowed us to corroborate the previous reported genotypes based on the intergenic region of mini-exon gene. More studies examining the genetic diversity among T. cruzi I populations must be conducted in order to obtain a better understanding in regions where this DTU is endemic.application/pdfhttps://doi.org/10.1016/j.meegid.2012.06.018ISSN: 1567-1348EISSN: 1567-7257https://repository.urosario.edu.co/handle/10336/28161engElsevier1750No. 81743Infection, Genetics and EvolutionVol. 12Infection, Genetics and Evolution, ISSN: 1567-1348;EISSN: 1567-7257, Vol.12, No.8 (2012); pp. 1743-1750https://www.sciencedirect.com/science/article/abs/pii/S1567134812002377?via%3DihubRestringido (Acceso a grupos específicos)http://purl.org/coar/access_right/c_16ecInfection, Genetics and Evolutioninstname:Universidad del Rosarioreponame:Repositorio Institucional EdocURDiscrete typing unitsChagas diseasePCR-RFLPTrypanosoma cruzi IGenetic diversityGenotypesMultilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation patternEl perfil multilocus PCR-RFLP en Trypanosoma cruzi I destaca un patrón de variación genética intraespecíficaarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Ramírez, Juan DavidDuque, María ClaraMontilla, MarlenyCucunubá, Zulma M.Guhl, Felipe10336/28161oai:repository.urosario.edu.co:10336/281612021-10-05 06:54:43.495https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |
dc.title.spa.fl_str_mv |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
dc.title.TranslatedTitle.spa.fl_str_mv |
El perfil multilocus PCR-RFLP en Trypanosoma cruzi I destaca un patrón de variación genética intraespecífica |
title |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
spellingShingle |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern Discrete typing units Chagas disease PCR-RFLP Trypanosoma cruzi I Genetic diversity Genotypes |
title_short |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
title_full |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
title_fullStr |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
title_full_unstemmed |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
title_sort |
Multilocus PCR-RFLP profiling in Trypanosoma cruzi I highlights an intraspecific genetic variation pattern |
dc.subject.keyword.spa.fl_str_mv |
Discrete typing units Chagas disease PCR-RFLP Trypanosoma cruzi I Genetic diversity Genotypes |
topic |
Discrete typing units Chagas disease PCR-RFLP Trypanosoma cruzi I Genetic diversity Genotypes |
description |
Chagas disease represents a serious problem in public health. This zoonotic pathology is caused by the kinetoplastid Trypanosoma cruzi which displays a high genetic diversity falling into six Discrete Typing Units (TcI–TcVI). In Colombia, the prevalent DTU is TcI with findings of TcII, TcIII and TcIV in low proportions. The aim of this work was to observe the genetic variability within TcI using a multilocus PCR-RFLP strategy. We analyzed 70 single-celled clones from triatomines, reservoirs and humans that were amplified and restricted via ten PCR-RFLPs targets across TcI genome, the restriction fragments were used to construct phylograms according to calculated genetic distances. We obtained five polymorphic targets (1f8, HSP60, HSP70, SAPA and H1) and the consensus tree constructed according to these regions allowed us to observe two well-defined groups with close association to the transmission cycles (domestic/peridomestic and sylvatic) of Chagas disease in Colombia. Our findings allowed us to corroborate the previous reported genotypes based on the intergenic region of mini-exon gene. More studies examining the genetic diversity among T. cruzi I populations must be conducted in order to obtain a better understanding in regions where this DTU is endemic. |
publishDate |
2012 |
dc.date.created.spa.fl_str_mv |
2012-12 |
dc.date.accessioned.none.fl_str_mv |
2020-08-19T14:46:11Z |
dc.date.available.none.fl_str_mv |
2020-08-19T14:46:11Z |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1016/j.meegid.2012.06.018 |
dc.identifier.issn.none.fl_str_mv |
ISSN: 1567-1348 EISSN: 1567-7257 |
dc.identifier.uri.none.fl_str_mv |
https://repository.urosario.edu.co/handle/10336/28161 |
url |
https://doi.org/10.1016/j.meegid.2012.06.018 https://repository.urosario.edu.co/handle/10336/28161 |
identifier_str_mv |
ISSN: 1567-1348 EISSN: 1567-7257 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationEndPage.none.fl_str_mv |
1750 |
dc.relation.citationIssue.none.fl_str_mv |
No. 8 |
dc.relation.citationStartPage.none.fl_str_mv |
1743 |
dc.relation.citationTitle.none.fl_str_mv |
Infection, Genetics and Evolution |
dc.relation.citationVolume.none.fl_str_mv |
Vol. 12 |
dc.relation.ispartof.spa.fl_str_mv |
Infection, Genetics and Evolution, ISSN: 1567-1348;EISSN: 1567-7257, Vol.12, No.8 (2012); pp. 1743-1750 |
dc.relation.uri.spa.fl_str_mv |
https://www.sciencedirect.com/science/article/abs/pii/S1567134812002377?via%3Dihub |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_16ec |
dc.rights.acceso.spa.fl_str_mv |
Restringido (Acceso a grupos específicos) |
rights_invalid_str_mv |
Restringido (Acceso a grupos específicos) http://purl.org/coar/access_right/c_16ec |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Elsevier |
dc.source.spa.fl_str_mv |
Infection, Genetics and Evolution |
institution |
Universidad del Rosario |
dc.source.instname.none.fl_str_mv |
instname:Universidad del Rosario |
dc.source.reponame.none.fl_str_mv |
reponame:Repositorio Institucional EdocUR |
repository.name.fl_str_mv |
Repositorio institucional EdocUR |
repository.mail.fl_str_mv |
edocur@urosario.edu.co |
_version_ |
1814167640224038912 |