Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution

MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannota...

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Autores:
Tipo de recurso:
Fecha de publicación:
2010
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/22623
Acceso en línea:
https://doi.org/10.1016/j.ympev.2010.02.017
https://repository.urosario.edu.co/handle/10336/22623
Palabra clave:
Membrane protein
Protozoal protein
Article
Biological model
Classification
Codon
Contig mapping
Dna sequence
Genetic selection
Genetics
Molecular evolution
Multigene family
Phylogeny
Plasmodium
Sequence alignment
Species difference
Codon
Contig mapping
Membrane proteins
Multigene family
Phylogeny
Plasmodium
Protozoan proteins
Sequence alignment
Species specificity
Functional redundancy
Gene duplication
Msp-7
Multigene family
Plasmodium
genetic
plasmodium
molecular
genetic
dna
Merozoite surface protein 7
Evolution
Models
Selection
Sequence analysis
Rights
License
Abierto (Texto Completo)
id EDOCUR2_72d455d681c4cbd627e2189d4c3aec58
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network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
spelling 3ebfcfb6-a457-40ec-9cb2-ae787e40bce0-132b8958d-1426-4267-a37f-4b69e93b04f8-179653065-12020-05-25T23:57:10Z2020-05-25T23:57:10Z2010MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannotated open reading frames (ORFs) and showed an uneven number of msp-7 genes among the different species of the Plasmodium lineage. A phylogenetic analysis established the presence of at least two ancestral genes and identified various lineage- and species-specific duplication events. An estimation of synonymous (dS) and non-synonymous substitutions (dN) showed higher dS values compared to dN values, suggesting the action of purifying selection on these genes, moreover no changes in ? (evolutive rates) were found in codon models test. These data together with the data obtained from the Gu's type-I functional divergence test and comparisons between evolutionary rates among orthologous and paralogous genes suggest functional redundancy. Finally, an analysis of recombination events suggests that several sequences are undergoing such process and that this mechanism could therefore be playing an important role in the emergence of new sequences. We conclude that evolution of the msp-7 family is in agreement with a birth-and-death model of evolution, as msp-7 genes have expanded until reaching an optimal gene copy number in each Plasmodium species in order to adapt to different niches. © 2010 Elsevier Inc. All rights reserved.application/pdfhttps://doi.org/10.1016/j.ympev.2010.02.0171095951310557903https://repository.urosario.edu.co/handle/10336/22623eng408No. 2399Molecular Phylogenetics and EvolutionVol. 55Molecular Phylogenetics and Evolution, ISSN:10959513, 10557903, Vol.55, No.2 (2010); pp. 399-408https://www.scopus.com/inward/record.uri?eid=2-s2.0-77950043187&doi=10.1016%2fj.ympev.2010.02.017&partnerID=40&md5=1592c9088e2d14d798d80b4e199bbf6fAbierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURMembrane proteinProtozoal proteinArticleBiological modelClassificationCodonContig mappingDna sequenceGenetic selectionGeneticsMolecular evolutionMultigene familyPhylogenyPlasmodiumSequence alignmentSpecies differenceCodonContig mappingMembrane proteinsMultigene familyPhylogenyPlasmodiumProtozoan proteinsSequence alignmentSpecies specificityFunctional redundancyGene duplicationMsp-7Multigene familyPlasmodiumgeneticplasmodiummoleculargeneticdnaMerozoite surface protein 7EvolutionModelsSelectionSequence analysisDifferential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolutionarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Garzón-Ospina, DiegoCadavid, Luis F.Patarroyo, Manuel A.10336/22623oai:repository.urosario.edu.co:10336/226232022-05-02 07:37:14.269368https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
title Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
spellingShingle Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
Membrane protein
Protozoal protein
Article
Biological model
Classification
Codon
Contig mapping
Dna sequence
Genetic selection
Genetics
Molecular evolution
Multigene family
Phylogeny
Plasmodium
Sequence alignment
Species difference
Codon
Contig mapping
Membrane proteins
Multigene family
Phylogeny
Plasmodium
Protozoan proteins
Sequence alignment
Species specificity
Functional redundancy
Gene duplication
Msp-7
Multigene family
Plasmodium
genetic
plasmodium
molecular
genetic
dna
Merozoite surface protein 7
Evolution
Models
Selection
Sequence analysis
title_short Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
title_full Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
title_fullStr Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
title_full_unstemmed Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
title_sort Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
dc.subject.keyword.spa.fl_str_mv Membrane protein
Protozoal protein
Article
Biological model
Classification
Codon
Contig mapping
Dna sequence
Genetic selection
Genetics
Molecular evolution
Multigene family
Phylogeny
Plasmodium
Sequence alignment
Species difference
Codon
Contig mapping
Membrane proteins
Multigene family
Phylogeny
Plasmodium
Protozoan proteins
Sequence alignment
Species specificity
Functional redundancy
Gene duplication
Msp-7
Multigene family
Plasmodium
topic Membrane protein
Protozoal protein
Article
Biological model
Classification
Codon
Contig mapping
Dna sequence
Genetic selection
Genetics
Molecular evolution
Multigene family
Phylogeny
Plasmodium
Sequence alignment
Species difference
Codon
Contig mapping
Membrane proteins
Multigene family
Phylogeny
Plasmodium
Protozoan proteins
Sequence alignment
Species specificity
Functional redundancy
Gene duplication
Msp-7
Multigene family
Plasmodium
genetic
plasmodium
molecular
genetic
dna
Merozoite surface protein 7
Evolution
Models
Selection
Sequence analysis
dc.subject.keyword.eng.fl_str_mv genetic
plasmodium
molecular
genetic
dna
Merozoite surface protein 7
Evolution
Models
Selection
Sequence analysis
description MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannotated open reading frames (ORFs) and showed an uneven number of msp-7 genes among the different species of the Plasmodium lineage. A phylogenetic analysis established the presence of at least two ancestral genes and identified various lineage- and species-specific duplication events. An estimation of synonymous (dS) and non-synonymous substitutions (dN) showed higher dS values compared to dN values, suggesting the action of purifying selection on these genes, moreover no changes in ? (evolutive rates) were found in codon models test. These data together with the data obtained from the Gu's type-I functional divergence test and comparisons between evolutionary rates among orthologous and paralogous genes suggest functional redundancy. Finally, an analysis of recombination events suggests that several sequences are undergoing such process and that this mechanism could therefore be playing an important role in the emergence of new sequences. We conclude that evolution of the msp-7 family is in agreement with a birth-and-death model of evolution, as msp-7 genes have expanded until reaching an optimal gene copy number in each Plasmodium species in order to adapt to different niches. © 2010 Elsevier Inc. All rights reserved.
publishDate 2010
dc.date.created.spa.fl_str_mv 2010
dc.date.accessioned.none.fl_str_mv 2020-05-25T23:57:10Z
dc.date.available.none.fl_str_mv 2020-05-25T23:57:10Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1016/j.ympev.2010.02.017
dc.identifier.issn.none.fl_str_mv 10959513
10557903
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/22623
url https://doi.org/10.1016/j.ympev.2010.02.017
https://repository.urosario.edu.co/handle/10336/22623
identifier_str_mv 10959513
10557903
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationEndPage.none.fl_str_mv 408
dc.relation.citationIssue.none.fl_str_mv No. 2
dc.relation.citationStartPage.none.fl_str_mv 399
dc.relation.citationTitle.none.fl_str_mv Molecular Phylogenetics and Evolution
dc.relation.citationVolume.none.fl_str_mv Vol. 55
dc.relation.ispartof.spa.fl_str_mv Molecular Phylogenetics and Evolution, ISSN:10959513, 10557903, Vol.55, No.2 (2010); pp. 399-408
dc.relation.uri.spa.fl_str_mv https://www.scopus.com/inward/record.uri?eid=2-s2.0-77950043187&doi=10.1016%2fj.ympev.2010.02.017&partnerID=40&md5=1592c9088e2d14d798d80b4e199bbf6f
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.spa.fl_str_mv Abierto (Texto Completo)
rights_invalid_str_mv Abierto (Texto Completo)
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv application/pdf
institution Universidad del Rosario
dc.source.instname.spa.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.spa.fl_str_mv reponame:Repositorio Institucional EdocUR
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
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