Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution
MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannota...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2010
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/22623
- Acceso en línea:
- https://doi.org/10.1016/j.ympev.2010.02.017
https://repository.urosario.edu.co/handle/10336/22623
- Palabra clave:
- Membrane protein
Protozoal protein
Article
Biological model
Classification
Codon
Contig mapping
Dna sequence
Genetic selection
Genetics
Molecular evolution
Multigene family
Phylogeny
Plasmodium
Sequence alignment
Species difference
Codon
Contig mapping
Membrane proteins
Multigene family
Phylogeny
Plasmodium
Protozoan proteins
Sequence alignment
Species specificity
Functional redundancy
Gene duplication
Msp-7
Multigene family
Plasmodium
genetic
plasmodium
molecular
genetic
dna
Merozoite surface protein 7
Evolution
Models
Selection
Sequence analysis
- Rights
- License
- Abierto (Texto Completo)
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Repositorio EdocUR - U. Rosario |
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3ebfcfb6-a457-40ec-9cb2-ae787e40bce0-132b8958d-1426-4267-a37f-4b69e93b04f8-179653065-12020-05-25T23:57:10Z2020-05-25T23:57:10Z2010MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannotated open reading frames (ORFs) and showed an uneven number of msp-7 genes among the different species of the Plasmodium lineage. A phylogenetic analysis established the presence of at least two ancestral genes and identified various lineage- and species-specific duplication events. An estimation of synonymous (dS) and non-synonymous substitutions (dN) showed higher dS values compared to dN values, suggesting the action of purifying selection on these genes, moreover no changes in ? (evolutive rates) were found in codon models test. These data together with the data obtained from the Gu's type-I functional divergence test and comparisons between evolutionary rates among orthologous and paralogous genes suggest functional redundancy. Finally, an analysis of recombination events suggests that several sequences are undergoing such process and that this mechanism could therefore be playing an important role in the emergence of new sequences. We conclude that evolution of the msp-7 family is in agreement with a birth-and-death model of evolution, as msp-7 genes have expanded until reaching an optimal gene copy number in each Plasmodium species in order to adapt to different niches. © 2010 Elsevier Inc. All rights reserved.application/pdfhttps://doi.org/10.1016/j.ympev.2010.02.0171095951310557903https://repository.urosario.edu.co/handle/10336/22623eng408No. 2399Molecular Phylogenetics and EvolutionVol. 55Molecular Phylogenetics and Evolution, ISSN:10959513, 10557903, Vol.55, No.2 (2010); pp. 399-408https://www.scopus.com/inward/record.uri?eid=2-s2.0-77950043187&doi=10.1016%2fj.ympev.2010.02.017&partnerID=40&md5=1592c9088e2d14d798d80b4e199bbf6fAbierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURMembrane proteinProtozoal proteinArticleBiological modelClassificationCodonContig mappingDna sequenceGenetic selectionGeneticsMolecular evolutionMultigene familyPhylogenyPlasmodiumSequence alignmentSpecies differenceCodonContig mappingMembrane proteinsMultigene familyPhylogenyPlasmodiumProtozoan proteinsSequence alignmentSpecies specificityFunctional redundancyGene duplicationMsp-7Multigene familyPlasmodiumgeneticplasmodiummoleculargeneticdnaMerozoite surface protein 7EvolutionModelsSelectionSequence analysisDifferential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolutionarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Garzón-Ospina, DiegoCadavid, Luis F.Patarroyo, Manuel A.10336/22623oai:repository.urosario.edu.co:10336/226232022-05-02 07:37:14.269368https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |
dc.title.spa.fl_str_mv |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
title |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
spellingShingle |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution Membrane protein Protozoal protein Article Biological model Classification Codon Contig mapping Dna sequence Genetic selection Genetics Molecular evolution Multigene family Phylogeny Plasmodium Sequence alignment Species difference Codon Contig mapping Membrane proteins Multigene family Phylogeny Plasmodium Protozoan proteins Sequence alignment Species specificity Functional redundancy Gene duplication Msp-7 Multigene family Plasmodium genetic plasmodium molecular genetic dna Merozoite surface protein 7 Evolution Models Selection Sequence analysis |
title_short |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
title_full |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
title_fullStr |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
title_full_unstemmed |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
title_sort |
Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution |
dc.subject.keyword.spa.fl_str_mv |
Membrane protein Protozoal protein Article Biological model Classification Codon Contig mapping Dna sequence Genetic selection Genetics Molecular evolution Multigene family Phylogeny Plasmodium Sequence alignment Species difference Codon Contig mapping Membrane proteins Multigene family Phylogeny Plasmodium Protozoan proteins Sequence alignment Species specificity Functional redundancy Gene duplication Msp-7 Multigene family Plasmodium |
topic |
Membrane protein Protozoal protein Article Biological model Classification Codon Contig mapping Dna sequence Genetic selection Genetics Molecular evolution Multigene family Phylogeny Plasmodium Sequence alignment Species difference Codon Contig mapping Membrane proteins Multigene family Phylogeny Plasmodium Protozoan proteins Sequence alignment Species specificity Functional redundancy Gene duplication Msp-7 Multigene family Plasmodium genetic plasmodium molecular genetic dna Merozoite surface protein 7 Evolution Models Selection Sequence analysis |
dc.subject.keyword.eng.fl_str_mv |
genetic plasmodium molecular genetic dna Merozoite surface protein 7 Evolution Models Selection Sequence analysis |
description |
MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannotated open reading frames (ORFs) and showed an uneven number of msp-7 genes among the different species of the Plasmodium lineage. A phylogenetic analysis established the presence of at least two ancestral genes and identified various lineage- and species-specific duplication events. An estimation of synonymous (dS) and non-synonymous substitutions (dN) showed higher dS values compared to dN values, suggesting the action of purifying selection on these genes, moreover no changes in ? (evolutive rates) were found in codon models test. These data together with the data obtained from the Gu's type-I functional divergence test and comparisons between evolutionary rates among orthologous and paralogous genes suggest functional redundancy. Finally, an analysis of recombination events suggests that several sequences are undergoing such process and that this mechanism could therefore be playing an important role in the emergence of new sequences. We conclude that evolution of the msp-7 family is in agreement with a birth-and-death model of evolution, as msp-7 genes have expanded until reaching an optimal gene copy number in each Plasmodium species in order to adapt to different niches. © 2010 Elsevier Inc. All rights reserved. |
publishDate |
2010 |
dc.date.created.spa.fl_str_mv |
2010 |
dc.date.accessioned.none.fl_str_mv |
2020-05-25T23:57:10Z |
dc.date.available.none.fl_str_mv |
2020-05-25T23:57:10Z |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1016/j.ympev.2010.02.017 |
dc.identifier.issn.none.fl_str_mv |
10959513 10557903 |
dc.identifier.uri.none.fl_str_mv |
https://repository.urosario.edu.co/handle/10336/22623 |
url |
https://doi.org/10.1016/j.ympev.2010.02.017 https://repository.urosario.edu.co/handle/10336/22623 |
identifier_str_mv |
10959513 10557903 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationEndPage.none.fl_str_mv |
408 |
dc.relation.citationIssue.none.fl_str_mv |
No. 2 |
dc.relation.citationStartPage.none.fl_str_mv |
399 |
dc.relation.citationTitle.none.fl_str_mv |
Molecular Phylogenetics and Evolution |
dc.relation.citationVolume.none.fl_str_mv |
Vol. 55 |
dc.relation.ispartof.spa.fl_str_mv |
Molecular Phylogenetics and Evolution, ISSN:10959513, 10557903, Vol.55, No.2 (2010); pp. 399-408 |
dc.relation.uri.spa.fl_str_mv |
https://www.scopus.com/inward/record.uri?eid=2-s2.0-77950043187&doi=10.1016%2fj.ympev.2010.02.017&partnerID=40&md5=1592c9088e2d14d798d80b4e199bbf6f |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.acceso.spa.fl_str_mv |
Abierto (Texto Completo) |
rights_invalid_str_mv |
Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
institution |
Universidad del Rosario |
dc.source.instname.spa.fl_str_mv |
instname:Universidad del Rosario |
dc.source.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional EdocUR |
repository.name.fl_str_mv |
Repositorio institucional EdocUR |
repository.mail.fl_str_mv |
edocur@urosario.edu.co |
_version_ |
1818106400477282304 |