Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L
Background: The msp-7 gene has become differentially expanded in the Plasmodium genus; Plasmodium vivax has the highest copy number of this gene, several of which encode antigenic proteins in merozoites. Methods: DNA sequences from thirty-six Colombian clinical isolates from P. vivax (pv) msp-7E, -7...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2014
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/21889
- Acceso en línea:
- https://doi.org/10.1186/1475-2875-13-495
https://repository.urosario.edu.co/handle/10336/21889
- Palabra clave:
- Enfermedades
Evolución & genética
Plasmodium vivax
msp-7
Genetic diversity
Natural selection
Selective sweep
- Rights
- License
- Abierto (Texto Completo)
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3ebfcfb6-a457-40ec-9cb2-ae787e40bce06007f799a76-52d4-4b25-ac8a-2cd27a9a2ef5600796530656002020-05-07T11:29:33Z2020-05-07T11:29:33Z20142014Background: The msp-7 gene has become differentially expanded in the Plasmodium genus; Plasmodium vivax has the highest copy number of this gene, several of which encode antigenic proteins in merozoites. Methods: DNA sequences from thirty-six Colombian clinical isolates from P. vivax (pv) msp-7E, -7F and -7L genes were analysed for characterizing and studying the genetic diversity of these pvmsp-7 members which are expressed during the intra-erythrocyte stage; natural selection signals producing the variation pattern so observed were evaluated. Results: The pvmsp-7E gene was highly polymorphic compared to pvmsp-7F and pvmsp-7L which were seen to have limited genetic diversity; pvmsp-7E polymorphism was seen to have been maintained by different types of positive selection. Even though these copies seemed to be species-specific duplications, a search in the Plasmodium cynomolgi genome (P. vivax sister taxon) showed that both species shared the whole msp-7 repertoire. This led to exploring the long-term effect of natural selection by comparing the orthologous sequences which led to finding signatures for lineage-specific positive selection. Conclusions: The results confirmed that the P. vivax msp-7 family has a heterogeneous genetic diversity pattern; some members are highly conserved whilst others are highly diverse. The results suggested that the 3′-end of these genes encode MSP-7 proteins' functional region whilst the central region of pvmsp-7E has evolved rapidly. The lineage-specific positive selection signals found suggested that mutations occurring in msp-7s genes during host switch may have succeeded in adapting the ancestral P. vivax parasite population to humans. © 2014 Garzón-Ospina et al.application/pdfhttps://doi.org/10.1186/1475-2875-13-4951475-2875https://repository.urosario.edu.co/handle/10336/21889engNo. 1Malaria JournalVol. 13Malaria Journal, ISSN: 1475-2875 Vol. 13, No. 1 (2014)https://malariajournal.biomedcentral.com/track/pdf/10.1186/1475-2875-13-495Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocUREnfermedades616600Evolución & genética575600Plasmodium vivaxmsp-7Genetic diversityNatural selectionSelective sweepHeterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7LarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Garzón-Ospina, DiegoForero Rodríguez, JohannaPatarroyo, Manuel A.Garzón-Ospina, DiegoForero-Rodríguez, JohannaPatarroyo, Manuel AORIGINALHeterogeneous genetic diversity pattern in Plasmodium vivax.pdfHeterogeneous genetic diversity pattern in Plasmodium vivax.pdfapplication/pdf1280987https://repository.urosario.edu.co/bitstreams/360e5786-cde4-4e36-9fbd-2eb7b5fe30c7/downloadfe5abe856777d3258b39a8eff6b83198MD51TEXTHeterogeneous genetic diversity pattern in Plasmodium vivax.pdf.txtHeterogeneous genetic diversity pattern in Plasmodium vivax.pdf.txtExtracted texttext/plain66943https://repository.urosario.edu.co/bitstreams/e55618c9-ec45-455b-9d10-07a7622bf2f0/download64d6a19741e4aec72309221601902d0aMD52THUMBNAILHeterogeneous genetic diversity pattern in Plasmodium vivax.pdf.jpgHeterogeneous genetic diversity pattern in Plasmodium vivax.pdf.jpgGenerated Thumbnailimage/jpeg4636https://repository.urosario.edu.co/bitstreams/25f82f16-902e-48c6-bbe6-737029c06b97/download498c56d4f748d08fb067189cfcbbbc85MD5310336/21889oai:repository.urosario.edu.co:10336/218892020-05-13 14:48:55.827https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |
dc.title.spa.fl_str_mv |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
title |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
spellingShingle |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L Enfermedades Evolución & genética Plasmodium vivax msp-7 Genetic diversity Natural selection Selective sweep |
title_short |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
title_full |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
title_fullStr |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
title_full_unstemmed |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
title_sort |
Heterogeneous genetic diversity pattern in Plasmodium vivax genes encoding merozoite surface proteins (MSP) -7E, -7F and -7L |
dc.subject.ddc.spa.fl_str_mv |
Enfermedades Evolución & genética |
topic |
Enfermedades Evolución & genética Plasmodium vivax msp-7 Genetic diversity Natural selection Selective sweep |
dc.subject.keyword.spa.fl_str_mv |
Plasmodium vivax msp-7 Genetic diversity Natural selection Selective sweep |
description |
Background: The msp-7 gene has become differentially expanded in the Plasmodium genus; Plasmodium vivax has the highest copy number of this gene, several of which encode antigenic proteins in merozoites. Methods: DNA sequences from thirty-six Colombian clinical isolates from P. vivax (pv) msp-7E, -7F and -7L genes were analysed for characterizing and studying the genetic diversity of these pvmsp-7 members which are expressed during the intra-erythrocyte stage; natural selection signals producing the variation pattern so observed were evaluated. Results: The pvmsp-7E gene was highly polymorphic compared to pvmsp-7F and pvmsp-7L which were seen to have limited genetic diversity; pvmsp-7E polymorphism was seen to have been maintained by different types of positive selection. Even though these copies seemed to be species-specific duplications, a search in the Plasmodium cynomolgi genome (P. vivax sister taxon) showed that both species shared the whole msp-7 repertoire. This led to exploring the long-term effect of natural selection by comparing the orthologous sequences which led to finding signatures for lineage-specific positive selection. Conclusions: The results confirmed that the P. vivax msp-7 family has a heterogeneous genetic diversity pattern; some members are highly conserved whilst others are highly diverse. The results suggested that the 3′-end of these genes encode MSP-7 proteins' functional region whilst the central region of pvmsp-7E has evolved rapidly. The lineage-specific positive selection signals found suggested that mutations occurring in msp-7s genes during host switch may have succeeded in adapting the ancestral P. vivax parasite population to humans. © 2014 Garzón-Ospina et al. |
publishDate |
2014 |
dc.date.created.none.fl_str_mv |
2014 |
dc.date.issued.none.fl_str_mv |
2014 |
dc.date.accessioned.none.fl_str_mv |
2020-05-07T11:29:33Z |
dc.date.available.none.fl_str_mv |
2020-05-07T11:29:33Z |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1186/1475-2875-13-495 |
dc.identifier.issn.none.fl_str_mv |
1475-2875 |
dc.identifier.uri.none.fl_str_mv |
https://repository.urosario.edu.co/handle/10336/21889 |
url |
https://doi.org/10.1186/1475-2875-13-495 https://repository.urosario.edu.co/handle/10336/21889 |
identifier_str_mv |
1475-2875 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationIssue.none.fl_str_mv |
No. 1 |
dc.relation.citationTitle.none.fl_str_mv |
Malaria Journal |
dc.relation.citationVolume.none.fl_str_mv |
Vol. 13 |
dc.relation.ispartof.spa.fl_str_mv |
Malaria Journal, ISSN: 1475-2875 Vol. 13, No. 1 (2014) |
dc.relation.uri.spa.fl_str_mv |
https://malariajournal.biomedcentral.com/track/pdf/10.1186/1475-2875-13-495 |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.acceso.spa.fl_str_mv |
Abierto (Texto Completo) |
rights_invalid_str_mv |
Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
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Universidad del Rosario |
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