An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016
Background: Enterococcus faecium is ranked worldwide as one of the top ten pathogens identified in healthcare-associated infections (HAI) and is classified as one of the high priority pathogens for research and development of new antibiotics worldwide. Due to molecular biology techniques' highe...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2019
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/23565
- Acceso en línea:
- https://doi.org/10.1186/s12879-019-3877-7
https://repository.urosario.edu.co/handle/10336/23565
- Palabra clave:
- Antibiotic sensitivity
Article
Bacterial gene
Bacterial strain
Bacterial transmission
Bacterium contamination
Bacterium isolate
Clinical article
Clonal variation
Colombia
Controlled study
Cross-sectional study
Descriptive research
Disease surveillance
Enterococcus faecium
Epidemic
Gene identification
Genetic algorithm
Hospital infection
Human
Molecular dynamics
Molecular typing
Nonhuman
Observational study
Phenotype
Prevalence
Retrospective study
Sequence analysis
Teaching hospital
Vana gene
Vancomycin resistant enterococcus
Variable number of tandem repeat
Bacterium identification
Classification
Drug effect
Enterococcus faecium
Epidemic
Genetics
Gram positive infection
Isolation and purification
Microbial sensitivity test
Microbiology
Molecular epidemiology
Multilocus sequence typing
Teaching hospital
Transmission
Vancomycin resistant enterococcus
Antiinfective agent
Bacterial protein
Vancomycin
Anti-bacterial agents
Bacterial proteins
Bacterial typing techniques
Colombia
Disease outbreaks
Enterococcus faecium
Gram-positive bacterial infections
Humans
Microbial sensitivity tests
Molecular epidemiology
Multilocus sequence typing
Vancomycin
Vancomycin-resistant enterococci
Antimicrobial resistance
Outbreak surveillance
Time-place-sequence algorithm
Vancomycin-resistant enterococcus faecium
teaching
Hospitals
- Rights
- License
- Abierto (Texto Completo)
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dc.title.spa.fl_str_mv |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
title |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
spellingShingle |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 Antibiotic sensitivity Article Bacterial gene Bacterial strain Bacterial transmission Bacterium contamination Bacterium isolate Clinical article Clonal variation Colombia Controlled study Cross-sectional study Descriptive research Disease surveillance Enterococcus faecium Epidemic Gene identification Genetic algorithm Hospital infection Human Molecular dynamics Molecular typing Nonhuman Observational study Phenotype Prevalence Retrospective study Sequence analysis Teaching hospital Vana gene Vancomycin resistant enterococcus Variable number of tandem repeat Bacterium identification Classification Drug effect Enterococcus faecium Epidemic Genetics Gram positive infection Isolation and purification Microbial sensitivity test Microbiology Molecular epidemiology Multilocus sequence typing Teaching hospital Transmission Vancomycin resistant enterococcus Antiinfective agent Bacterial protein Vancomycin Anti-bacterial agents Bacterial proteins Bacterial typing techniques Colombia Disease outbreaks Enterococcus faecium Gram-positive bacterial infections Humans Microbial sensitivity tests Molecular epidemiology Multilocus sequence typing Vancomycin Vancomycin-resistant enterococci Antimicrobial resistance Outbreak surveillance Time-place-sequence algorithm Vancomycin-resistant enterococcus faecium teaching Hospitals |
title_short |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
title_full |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
title_fullStr |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
title_full_unstemmed |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
title_sort |
An epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016 |
dc.subject.keyword.spa.fl_str_mv |
Antibiotic sensitivity Article Bacterial gene Bacterial strain Bacterial transmission Bacterium contamination Bacterium isolate Clinical article Clonal variation Colombia Controlled study Cross-sectional study Descriptive research Disease surveillance Enterococcus faecium Epidemic Gene identification Genetic algorithm Hospital infection Human Molecular dynamics Molecular typing Nonhuman Observational study Phenotype Prevalence Retrospective study Sequence analysis Teaching hospital Vana gene Vancomycin resistant enterococcus Variable number of tandem repeat Bacterium identification Classification Drug effect Enterococcus faecium Epidemic Genetics Gram positive infection Isolation and purification Microbial sensitivity test Microbiology Molecular epidemiology Multilocus sequence typing Teaching hospital Transmission Vancomycin resistant enterococcus Antiinfective agent Bacterial protein Vancomycin Anti-bacterial agents Bacterial proteins Bacterial typing techniques Colombia Disease outbreaks Enterococcus faecium Gram-positive bacterial infections Humans Microbial sensitivity tests Molecular epidemiology Multilocus sequence typing Vancomycin Vancomycin-resistant enterococci Antimicrobial resistance Outbreak surveillance Time-place-sequence algorithm Vancomycin-resistant enterococcus faecium |
topic |
Antibiotic sensitivity Article Bacterial gene Bacterial strain Bacterial transmission Bacterium contamination Bacterium isolate Clinical article Clonal variation Colombia Controlled study Cross-sectional study Descriptive research Disease surveillance Enterococcus faecium Epidemic Gene identification Genetic algorithm Hospital infection Human Molecular dynamics Molecular typing Nonhuman Observational study Phenotype Prevalence Retrospective study Sequence analysis Teaching hospital Vana gene Vancomycin resistant enterococcus Variable number of tandem repeat Bacterium identification Classification Drug effect Enterococcus faecium Epidemic Genetics Gram positive infection Isolation and purification Microbial sensitivity test Microbiology Molecular epidemiology Multilocus sequence typing Teaching hospital Transmission Vancomycin resistant enterococcus Antiinfective agent Bacterial protein Vancomycin Anti-bacterial agents Bacterial proteins Bacterial typing techniques Colombia Disease outbreaks Enterococcus faecium Gram-positive bacterial infections Humans Microbial sensitivity tests Molecular epidemiology Multilocus sequence typing Vancomycin Vancomycin-resistant enterococci Antimicrobial resistance Outbreak surveillance Time-place-sequence algorithm Vancomycin-resistant enterococcus faecium teaching Hospitals |
dc.subject.keyword.eng.fl_str_mv |
teaching Hospitals |
description |
Background: Enterococcus faecium is ranked worldwide as one of the top ten pathogens identified in healthcare-associated infections (HAI) and is classified as one of the high priority pathogens for research and development of new antibiotics worldwide. Due to molecular biology techniques' higher costs, the approach for identifying and controlling infectious diseases in developing countries has been based on clinical and epidemiological perspectives. Nevertheless, after an abrupt vancomycin-resistant Enterococcus faecium dissemination in the Méderi teaching hospital, ending up in an outbreak, further measures needed to be taken into consideration. The present study describes the vancomycin-resistant Enterococcus faecium pattern within Colombian's largest installed-bed capacity hospital in 2016. Methods: Thirty-three vancomycin-resistant Enterococcus faecium isolates were recovered during a 5-month period in 2016. Multilocus variable-number tandem-repeat analysis was used for molecular typing to determine clonality amongst strains. A modified time-place-sequence algorithm was used to trace VREfm spread patterns during the outbreak period and estimate transmission routes. Results: Four clonal profiles were identified. Chronological clonal profile follow-up suggested a transitional spread from profile 'A' to profile 'B', returning to a higher prevalence of 'A' by the end of the study. Antibiotic susceptibility indicated high-level vancomycin-resistance in most isolates frequently matching vanA gene identification. Discussion: Transmission analysis suggested cross-contamination via healthcare workers. Despite epidemiological control of the outbreak, post-outbreak isolates were still being identified as having outbreak-related clonal profile (A), indicating reduction but not eradication of this clonality. This study supports the use of combined molecular and epidemiological strategies in an approach to controlling infectious diseases. It contributes towards a more accurate evaluation of the effectiveness of the epidemiological measures taken regarding outbreak control and estimates the main cause related to the spread of this microorganism. © 2019 The Author(s). |
publishDate |
2019 |
dc.date.created.spa.fl_str_mv |
2019 |
dc.date.accessioned.none.fl_str_mv |
2020-05-26T00:03:08Z |
dc.date.available.none.fl_str_mv |
2020-05-26T00:03:08Z |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1186/s12879-019-3877-7 |
dc.identifier.issn.none.fl_str_mv |
14712334 |
dc.identifier.uri.none.fl_str_mv |
https://repository.urosario.edu.co/handle/10336/23565 |
url |
https://doi.org/10.1186/s12879-019-3877-7 https://repository.urosario.edu.co/handle/10336/23565 |
identifier_str_mv |
14712334 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationIssue.none.fl_str_mv |
No. 1 |
dc.relation.citationTitle.none.fl_str_mv |
BMC Infectious Diseases |
dc.relation.citationVolume.none.fl_str_mv |
Vol. 19 |
dc.relation.ispartof.spa.fl_str_mv |
BMC Infectious Diseases, ISSN:14712334, Vol.19, No.1 (2019) |
dc.relation.uri.spa.fl_str_mv |
https://www.scopus.com/inward/record.uri?eid=2-s2.0-85062963788&doi=10.1186%2fs12879-019-3877-7&partnerID=40&md5=6aecd5f3866c9d5cefee6ccc78d3a87e |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.acceso.spa.fl_str_mv |
Abierto (Texto Completo) |
rights_invalid_str_mv |
Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
BioMed Central Ltd. |
institution |
Universidad del Rosario |
dc.source.instname.spa.fl_str_mv |
instname:Universidad del Rosario |
dc.source.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional EdocUR |
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spelling |
dcbadddf-9968-4e54-b8e9-b3e2aa3623a9f04dd5c4-d685-4cee-a3d9-d2c759ef003f7ec46887-b157-41ec-a300-16efbda522b6b88c2a24-a7f0-4f6f-b9b4-1fd180fbed9712190b3a-78b5-4aca-9a9b-d88d422e9a8c0b45bee5-44de-4288-b14f-c4b5af210f8b80423861600d9a52c70-2457-4a57-8d27-fa90ac4966c579518713600796530656002020-05-26T00:03:08Z2020-05-26T00:03:08Z2019Background: Enterococcus faecium is ranked worldwide as one of the top ten pathogens identified in healthcare-associated infections (HAI) and is classified as one of the high priority pathogens for research and development of new antibiotics worldwide. Due to molecular biology techniques' higher costs, the approach for identifying and controlling infectious diseases in developing countries has been based on clinical and epidemiological perspectives. Nevertheless, after an abrupt vancomycin-resistant Enterococcus faecium dissemination in the Méderi teaching hospital, ending up in an outbreak, further measures needed to be taken into consideration. The present study describes the vancomycin-resistant Enterococcus faecium pattern within Colombian's largest installed-bed capacity hospital in 2016. Methods: Thirty-three vancomycin-resistant Enterococcus faecium isolates were recovered during a 5-month period in 2016. Multilocus variable-number tandem-repeat analysis was used for molecular typing to determine clonality amongst strains. A modified time-place-sequence algorithm was used to trace VREfm spread patterns during the outbreak period and estimate transmission routes. Results: Four clonal profiles were identified. Chronological clonal profile follow-up suggested a transitional spread from profile 'A' to profile 'B', returning to a higher prevalence of 'A' by the end of the study. Antibiotic susceptibility indicated high-level vancomycin-resistance in most isolates frequently matching vanA gene identification. Discussion: Transmission analysis suggested cross-contamination via healthcare workers. Despite epidemiological control of the outbreak, post-outbreak isolates were still being identified as having outbreak-related clonal profile (A), indicating reduction but not eradication of this clonality. This study supports the use of combined molecular and epidemiological strategies in an approach to controlling infectious diseases. It contributes towards a more accurate evaluation of the effectiveness of the epidemiological measures taken regarding outbreak control and estimates the main cause related to the spread of this microorganism. © 2019 The Author(s).application/pdfhttps://doi.org/10.1186/s12879-019-3877-714712334https://repository.urosario.edu.co/handle/10336/23565engBioMed Central Ltd.No. 1BMC Infectious DiseasesVol. 19BMC Infectious Diseases, ISSN:14712334, Vol.19, No.1 (2019)https://www.scopus.com/inward/record.uri?eid=2-s2.0-85062963788&doi=10.1186%2fs12879-019-3877-7&partnerID=40&md5=6aecd5f3866c9d5cefee6ccc78d3a87eAbierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURAntibiotic sensitivityArticleBacterial geneBacterial strainBacterial transmissionBacterium contaminationBacterium isolateClinical articleClonal variationColombiaControlled studyCross-sectional studyDescriptive researchDisease surveillanceEnterococcus faeciumEpidemicGene identificationGenetic algorithmHospital infectionHumanMolecular dynamicsMolecular typingNonhumanObservational studyPhenotypePrevalenceRetrospective studySequence analysisTeaching hospitalVana geneVancomycin resistant enterococcusVariable number of tandem repeatBacterium identificationClassificationDrug effectEnterococcus faeciumEpidemicGeneticsGram positive infectionIsolation and purificationMicrobial sensitivity testMicrobiologyMolecular epidemiologyMultilocus sequence typingTeaching hospitalTransmissionVancomycin resistant enterococcusAntiinfective agentBacterial proteinVancomycinAnti-bacterial agentsBacterial proteinsBacterial typing techniquesColombiaDisease outbreaksEnterococcus faeciumGram-positive bacterial infectionsHumansMicrobial sensitivity testsMolecular epidemiologyMultilocus sequence typingVancomycinVancomycin-resistant enterococciAntimicrobial resistanceOutbreak surveillanceTime-place-sequence algorithmVancomycin-resistant enterococcus faeciumteachingHospitalsAn epidemiological and molecular study regarding the spread of vancomycin-resistant Enterococcus faecium in a teaching hospital in Bogotá, Colombia 2016articleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Corredor, Nancy CarolinaLópez, CarolinaAguilera, Paula AndreaPrieto, Lina MaríaLeal, Aura LucíaOvalle-Guerro, María VictoriaPardo Oviedo, Juan MauricioChica, Claudia ElenaRodriguez-Leguizamon, GiovanniPatarroyo, Manuel A.ORIGINALs12879-019-3877-7.pdfapplication/pdf1183563https://repository.urosario.edu.co/bitstreams/1b859c03-9b90-490b-89d3-9027633d8b7a/download9e696cfd8b705c31a55c4e74ecf82be9MD51TEXTs12879-019-3877-7.pdf.txts12879-019-3877-7.pdf.txtExtracted texttext/plain51044https://repository.urosario.edu.co/bitstreams/b6e20160-e1da-44a1-81d7-ac2a61c316e2/download77037c5cc75a6e169daabf0f4aa7cc22MD52THUMBNAILs12879-019-3877-7.pdf.jpgs12879-019-3877-7.pdf.jpgGenerated Thumbnailimage/jpeg4497https://repository.urosario.edu.co/bitstreams/400a926e-2b13-4fec-a9cc-e69f4df8823c/download61f0a168f9ca5f5930524ad929283f64MD5310336/23565oai:repository.urosario.edu.co:10336/235652022-05-02 07:37:17.014119https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |