Recombination rate variation shapes barriers to introgression across butterfly genomes

Hybridisation and introgression can dramatically alter the relationships among groups of species, leading to phylogenetic discordance across the genome and between populations. Introgression can also erode species differences over time, but selection against introgression at certain loci acts to mai...

Full description

Autores:
Tipo de recurso:
Fecha de publicación:
2019
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/22819
Acceso en línea:
https://doi.org/10.1371/journal.pbio.2006288
https://repository.urosario.edu.co/handle/10336/22819
Palabra clave:
Adult
Insect
Allele
Population
Genetic
Chromosome
Female
Genome
Human
Human experiment
Introgression
Major clinical study
Male
Natural selection
Nonhuman
Animal
Butterfly
Gene flow
Genetics
Insect chromosome
Insect genome
Population genetics
Species difference
Butterflies
Gene flow
Phylogeny
Recombination
Selection
Species specificity
Genetic recombination
Genetic selection
Rights
License
Abierto (Texto Completo)
id EDOCUR2_5cbefde49aa429f4352ba7346a73fe4d
oai_identifier_str oai:repository.urosario.edu.co:10336/22819
network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
spelling ccf50b0a-1aea-457e-ab8e-b068befe242d0d02e9a7-b394-4b66-a9f4-d0282277493179873757600a4f04058-0f30-4170-bdb3-38b70c0218302020-05-25T23:58:11Z2020-05-25T23:58:11Z2019Hybridisation and introgression can dramatically alter the relationships among groups of species, leading to phylogenetic discordance across the genome and between populations. Introgression can also erode species differences over time, but selection against introgression at certain loci acts to maintain postmating species barriers. Theory predicts that species barriers made up of many loci throughout the genome should lead to a broad correlation between introgression and recombination rate, which determines the extent to which selection on deleterious foreign alleles will affect neutral alleles at physically linked loci. Here, we describe the variation in genealogical relationships across the genome among three species of Heliconius butterflies: H. melpomene (mel), H. cydno (cyd), and H. timareta (tim), using whole genomes of 92 individuals, and ask whether this variation can be explained by heterogeneous barriers to introgression. We find that species relationships vary predictably at the chromosomal scale. By quantifying recombination rate and admixture proportions, we then show that rates of introgression are predicted by variation in recombination rate. This implies that species barriers are highly polygenic, with selection acting against introgressed alleles across most of the genome. In addition, long chromosomes, which have lower recombination rates, produce stronger barriers on average than short chromosomes. Finally, we find a consistent difference between two species pairs on either side of the Andes, which suggests differences in the architecture of the species barriers. Our findings illustrate how the combined effects of hybridisation, recombination, and natural selection, acting at multitudes of loci over long periods, can dramatically sculpt the phylogenetic relationships among species. © 2019 Martin et al.application/pdfhttps://doi.org/10.1371/journal.pbio.20062881544917315457885https://repository.urosario.edu.co/handle/10336/22819engPublic Library of ScienceNo. 2PLoS BiologyVol. 17PLoS Biology, ISSN:15449173, 15457885, Vol.17, No.2 (2019)https://www.scopus.com/inward/record.uri?eid=2-s2.0-85061272706&doi=10.1371%2fjournal.pbio.2006288&partnerID=40&md5=1d1b61a6e1f40ebb4edb17af2595698cAbierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURAdultInsectAllelePopulationGeneticChromosomeFemaleGenomeHumanHuman experimentIntrogressionMajor clinical studyMaleNatural selectionNonhumanAnimalButterflyGene flowGeneticsInsect chromosomeInsect genomePopulation geneticsSpecies differenceButterfliesGene flowPhylogenyRecombinationSelectionSpecies specificityGenetic recombinationGenetic selectionRecombination rate variation shapes barriers to introgression across butterfly genomesarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Martin, Simon H.Davey, John W.Salazar, CamiloJiggins, Chris DORIGINALjournal-pbio-2006288.pdfapplication/pdf2940129https://repository.urosario.edu.co/bitstreams/9509b3d6-6109-4530-ac4f-b5f20ef1b46c/download52e1932c28abfa9a3f1016e67c517b42MD51TEXTjournal-pbio-2006288.pdf.txtjournal-pbio-2006288.pdf.txtExtracted texttext/plain111788https://repository.urosario.edu.co/bitstreams/e8d757bd-7717-4301-b9c1-43f9055ce543/downloadf3c065e6b10974eda7d3e626a6f60a8cMD52THUMBNAILjournal-pbio-2006288.pdf.jpgjournal-pbio-2006288.pdf.jpgGenerated Thumbnailimage/jpeg4336https://repository.urosario.edu.co/bitstreams/5a0aa219-3e8f-48d1-86bf-bb68d00bb893/downloade3af40dfded48fd232e1c35bc51c6e9bMD5310336/22819oai:repository.urosario.edu.co:10336/228192022-08-27 10:16:38.052https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv Recombination rate variation shapes barriers to introgression across butterfly genomes
title Recombination rate variation shapes barriers to introgression across butterfly genomes
spellingShingle Recombination rate variation shapes barriers to introgression across butterfly genomes
Adult
Insect
Allele
Population
Genetic
Chromosome
Female
Genome
Human
Human experiment
Introgression
Major clinical study
Male
Natural selection
Nonhuman
Animal
Butterfly
Gene flow
Genetics
Insect chromosome
Insect genome
Population genetics
Species difference
Butterflies
Gene flow
Phylogeny
Recombination
Selection
Species specificity
Genetic recombination
Genetic selection
title_short Recombination rate variation shapes barriers to introgression across butterfly genomes
title_full Recombination rate variation shapes barriers to introgression across butterfly genomes
title_fullStr Recombination rate variation shapes barriers to introgression across butterfly genomes
title_full_unstemmed Recombination rate variation shapes barriers to introgression across butterfly genomes
title_sort Recombination rate variation shapes barriers to introgression across butterfly genomes
dc.subject.keyword.eng.fl_str_mv Adult
Insect
Allele
Population
Genetic
Chromosome
Female
Genome
Human
Human experiment
Introgression
Major clinical study
Male
Natural selection
Nonhuman
Animal
Butterfly
Gene flow
Genetics
Insect chromosome
Insect genome
Population genetics
Species difference
Butterflies
Gene flow
Phylogeny
Recombination
Selection
Species specificity
topic Adult
Insect
Allele
Population
Genetic
Chromosome
Female
Genome
Human
Human experiment
Introgression
Major clinical study
Male
Natural selection
Nonhuman
Animal
Butterfly
Gene flow
Genetics
Insect chromosome
Insect genome
Population genetics
Species difference
Butterflies
Gene flow
Phylogeny
Recombination
Selection
Species specificity
Genetic recombination
Genetic selection
dc.subject.keyword.spa.fl_str_mv Genetic recombination
Genetic selection
description Hybridisation and introgression can dramatically alter the relationships among groups of species, leading to phylogenetic discordance across the genome and between populations. Introgression can also erode species differences over time, but selection against introgression at certain loci acts to maintain postmating species barriers. Theory predicts that species barriers made up of many loci throughout the genome should lead to a broad correlation between introgression and recombination rate, which determines the extent to which selection on deleterious foreign alleles will affect neutral alleles at physically linked loci. Here, we describe the variation in genealogical relationships across the genome among three species of Heliconius butterflies: H. melpomene (mel), H. cydno (cyd), and H. timareta (tim), using whole genomes of 92 individuals, and ask whether this variation can be explained by heterogeneous barriers to introgression. We find that species relationships vary predictably at the chromosomal scale. By quantifying recombination rate and admixture proportions, we then show that rates of introgression are predicted by variation in recombination rate. This implies that species barriers are highly polygenic, with selection acting against introgressed alleles across most of the genome. In addition, long chromosomes, which have lower recombination rates, produce stronger barriers on average than short chromosomes. Finally, we find a consistent difference between two species pairs on either side of the Andes, which suggests differences in the architecture of the species barriers. Our findings illustrate how the combined effects of hybridisation, recombination, and natural selection, acting at multitudes of loci over long periods, can dramatically sculpt the phylogenetic relationships among species. © 2019 Martin et al.
publishDate 2019
dc.date.created.spa.fl_str_mv 2019
dc.date.accessioned.none.fl_str_mv 2020-05-25T23:58:11Z
dc.date.available.none.fl_str_mv 2020-05-25T23:58:11Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1371/journal.pbio.2006288
dc.identifier.issn.none.fl_str_mv 15449173
15457885
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/22819
url https://doi.org/10.1371/journal.pbio.2006288
https://repository.urosario.edu.co/handle/10336/22819
identifier_str_mv 15449173
15457885
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationIssue.none.fl_str_mv No. 2
dc.relation.citationTitle.none.fl_str_mv PLoS Biology
dc.relation.citationVolume.none.fl_str_mv Vol. 17
dc.relation.ispartof.spa.fl_str_mv PLoS Biology, ISSN:15449173, 15457885, Vol.17, No.2 (2019)
dc.relation.uri.spa.fl_str_mv https://www.scopus.com/inward/record.uri?eid=2-s2.0-85061272706&doi=10.1371%2fjournal.pbio.2006288&partnerID=40&md5=1d1b61a6e1f40ebb4edb17af2595698c
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.spa.fl_str_mv Abierto (Texto Completo)
rights_invalid_str_mv Abierto (Texto Completo)
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Public Library of Science
institution Universidad del Rosario
dc.source.instname.spa.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.spa.fl_str_mv reponame:Repositorio Institucional EdocUR
bitstream.url.fl_str_mv https://repository.urosario.edu.co/bitstreams/9509b3d6-6109-4530-ac4f-b5f20ef1b46c/download
https://repository.urosario.edu.co/bitstreams/e8d757bd-7717-4301-b9c1-43f9055ce543/download
https://repository.urosario.edu.co/bitstreams/5a0aa219-3e8f-48d1-86bf-bb68d00bb893/download
bitstream.checksum.fl_str_mv 52e1932c28abfa9a3f1016e67c517b42
f3c065e6b10974eda7d3e626a6f60a8c
e3af40dfded48fd232e1c35bc51c6e9b
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
_version_ 1814167741193519104