Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica

Juglans neotropica es una especie arbórea en peligro, amenazada principalmente por la disminución de su hábitat y su alto valor comercial por su producción de madera y nueces, por lo que es urgente encontrar estrategias de conservación para la especie en los ecosistemas sudamericanos. Se sabe que J....

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2024
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Universidad del Rosario
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Repositorio EdocUR - U. Rosario
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eng
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Palabra clave:
Juglans neotropica
Micorrizas arbusculares
Comunidades fúngicas asociadas a las raíces
Microbioma del suelo
Bosque montano tropical
Restauración ecológica
Juglans neotropica
Arbuscular mycorrhiza
Root-associated fungal communities
soil microbiome
Tropical montane forest
Ecological restoration
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id EDOCUR2_39cc4737b91562767ba6fcba76850c3b
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network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
dc.title.none.fl_str_mv Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
dc.title.TranslatedTitle.none.fl_str_mv Uso del suelo nativo como inóculo para la restauración de microorganismos del suelo en Juglans neotropica
title Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
spellingShingle Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
Juglans neotropica
Micorrizas arbusculares
Comunidades fúngicas asociadas a las raíces
Microbioma del suelo
Bosque montano tropical
Restauración ecológica
Juglans neotropica
Arbuscular mycorrhiza
Root-associated fungal communities
soil microbiome
Tropical montane forest
Ecological restoration
title_short Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
title_full Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
title_fullStr Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
title_full_unstemmed Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
title_sort Use of native soil as inoculum for the restoration of soil microorganisms in Juglans neotropica
dc.contributor.advisor.none.fl_str_mv Corrales Osorio, Adriana
dc.subject.none.fl_str_mv Juglans neotropica
Micorrizas arbusculares
Comunidades fúngicas asociadas a las raíces
Microbioma del suelo
Bosque montano tropical
Restauración ecológica
topic Juglans neotropica
Micorrizas arbusculares
Comunidades fúngicas asociadas a las raíces
Microbioma del suelo
Bosque montano tropical
Restauración ecológica
Juglans neotropica
Arbuscular mycorrhiza
Root-associated fungal communities
soil microbiome
Tropical montane forest
Ecological restoration
dc.subject.keyword.none.fl_str_mv Juglans neotropica
Arbuscular mycorrhiza
Root-associated fungal communities
soil microbiome
Tropical montane forest
Ecological restoration
description Juglans neotropica es una especie arbórea en peligro, amenazada principalmente por la disminución de su hábitat y su alto valor comercial por su producción de madera y nueces, por lo que es urgente encontrar estrategias de conservación para la especie en los ecosistemas sudamericanos. Se sabe que J. neotropica forma relaciones simbióticas con hongos asociados a las raíces, incluidas las micorrizas arbusculares (HMA), que desempeñan un papel fundamental en la supervivencia de las plántulas al mejorar la absorción de nutrientes (Mortier et al. 2020). Normalmente, el microbioma del suelo queda totalmente olvidado cuando se trata de planes de conservación y restauración de ecosistemas, aunque conocemos su importancia para el desarrollo y supervivencia de las plantas. En nuestro estudio, implementamos tres tipos de inóculo nativo de Juglans en el suelo en plántulas de vivero para observar la influencia de esto en el crecimiento de las plántulas. Encontramos que las plántulas de J.neotropica se ven influenciadas positivamente en su crecimiento cuando se siembran con inóculo de suelo nativo de árboles adultos conespecíficos, el cual podría contener un microbioma que puede mejorar su rendimiento, asimismo, encontramos una alta abundancia de fitopatógenos dentro de las muestras correspondientes a plántulas que fueron sembradas con turba estéril comercial. Nuestros resultados resaltan la importancia de incluir el microbioma del suelo en los procesos de propagación para aumentar el crecimiento, la salud y la supervivencia de las plántulas.
publishDate 2024
dc.date.accessioned.none.fl_str_mv 2024-04-01T16:32:14Z
dc.date.available.none.fl_str_mv 2024-04-01T16:32:14Z
dc.date.created.none.fl_str_mv 2024-03-22
dc.date.embargoEnd.none.fl_str_mv info:eu-repo/date/embargoEnd/2026-04-02
dc.type.none.fl_str_mv bachelorThesis
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_7a1f
dc.type.document.none.fl_str_mv Tesis
dc.type.spa.none.fl_str_mv Tesis
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/42383
url https://repository.urosario.edu.co/handle/10336/42383
dc.language.iso.none.fl_str_mv eng
language eng
dc.rights.*.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_f1cf
dc.rights.acceso.none.fl_str_mv Restringido (Temporalmente bloqueado)
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
Restringido (Temporalmente bloqueado)
http://creativecommons.org/licenses/by-nc-nd/4.0/
http://purl.org/coar/access_right/c_f1cf
dc.format.extent.none.fl_str_mv 26 pp
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad del Rosario
dc.publisher.department.none.fl_str_mv Facultad de Ciencias Naturales
dc.publisher.program.none.fl_str_mv Biología
publisher.none.fl_str_mv Universidad del Rosario
institution Universidad del Rosario
dc.source.bibliographicCitation.none.fl_str_mv Achatz, M., & Rillig, M. C. (2014). Arbuscular mycorrhizal fungal hyphae enhance transport of the allelochemical juglone in the field. Soil Biology and Biochemistry, 78, 76-82. https://doi.org/10.1016/j.soilbio.2014.07.008
Achatz, M., Morris, E. K., Müller, F., Hilker, M., & Rillig, M. C. (2014). Soil hypha‐mediated movement of allelochemicals: arbuscular mycorrhizae extend the bioactive zone of juglone. Functional Ecology, 28(4), 1020-1029. https://doi.org/10.1111/1365-2435.12208
Álvarez García, L. López Marentes, S. Manchego Manotas, M. (2022). Delimitación de La Cuenca Cucuana, Precipitación.
Americas Regional Workshop (Conservation & Sustainable Management of Trees, Costa Rica, November 1996). 1998. Juglans neotropica. The IUCN Red List of Threatened Species 1998: e.T32078A9672729. https://dx.doi.org/10.2305/IUCN.UK.1998.RLTS.T32078A9672729.en. Accessed on 14 December 2023.
Anderson, M. J., Crist, T. O., Chase, J. M., Vellend, M., Inouye, B. D., Freestone, A. L., ... & Swenson, N. G. (2011). Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist. Ecology letters, 14(1), 19-28. https://doi.org/10.1111/j.1461-0248.2010.01552.x
Arteaga Cuba, M. N., Tafur Santillán, S. M., Pérez Hurtado, G., Pastor Ordinola, S. A., & Batista Mainegra, A. (2020). Caracterización de la colonización por micorrizas en Retrophyllum rospigliossi Pilger en el bosque Huamantanga, Perú. Revista Cubana de Ciencias Forestales, 8(3), 535-549.
Askun, T. (2018). Introductory chapter: Fusarium: pathogenicity, infections, diseases, mycotoxins and management. Fusarium: Plant Diseases, Pathogen Diversity, Genetic Diversity, Resistance and Molecular Markers, 1. http://dx.doi.org10.5772/intechopen.76507
Bengtsson‐Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., ... & Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in ecology and evolution, 4(10), 914-919. https://doi.org/10.1111/2041-210X.12073
Berendsen, R.L., Pieterse, C.M.J., & Bakker, P.A.H.M. (2012). The rhizosphere microbiome and plant health. Trends in Plant Science, 17(8), 478-486. https://doi.org/10.1016/j.tplants.2012.04.001
Booth, C. (1971). The genus fusarium. Kew, UK, Commonwealth Mycological Institute.
Bothe, H., Turnau, K., & Regvar, M. (2010). The potential role of arbuscular mycorrhizal fungi in protecting endangered plants and habitats. Mycorrhiza, 20, 445-457. https://doi.org/10.1007/s00572-010-0332-4
Busby, P. E., Newcombe, G., Neat, A. S., & Averill, C. (2022). Facilitating reforestation through the plant microbiome: Perspectives from the phyllosphere. Annual Review of Phytopathology, 60, 337-356. https://doi.org/10.1146/annurev-phyto-021320-010717
Compant, S., Samad, A., Faist, H., & Sessitsch, A. (2019). A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application. Journal of advanced research, 19, 29-37. https://doi.org/10.1016/j.jare.2019.03.004
Corrales, A. and DiMartino A. (2022, March 13). What we learned about tukti: the endangered Andean Walnut traditionally valued by Kichwa communities. The Tandana Foundation Blog. chttps://blog.tandanafoundation.org/2022/03/13/what-we-learned-about-tukti-the-endangered-andean-walnut-traditionally-valued-by-kichwa-communities/ accessed 27 june 2022
Edgar, R. C. et al. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194–2200 (2011). https://doi.org/10.1093/bioinformatics/btr381
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996–998 (2013). https://doi.org/10.1038/nmeth.2604
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Gardes, M., & Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology, 2(2), 113–118. https://doi.org/https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
Harrison, M. J. (1997). The arbuscular mycorrhizal symbiosis. In Plant-microbe interactions (pp. 1-34). Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-6019-7_1
Hejl, A. A., Einhellig, F. A., & Rasmussen, J. A. (1993). Effects of juglone on growth, photosynthesis, and respiration. Journal of Chemical Ecology, 19(3), 559-568. https://doi.org/10.1007/BF00994325
Jeffries, P., Gianinazzi, S., Perotto, S., Turnau, K., & Barea, J. M. (2003). The contribution of arbuscular mycorrhizal fungi in sustainable maintenance of plant health and soil fertility. Biology and fertility of soils, 37, 1-16. https://doi.org/10.1007/s00374-002-0546-5
McMurdie, P. J., & Holmes, S. (2013). phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS one, 8(4), e61217. https://doi.org/10.1371/journal.pone.0061217
Mendes, R., Garbeva, P., & Raaijmakers, J.M. (2013). The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiology Reviews, 37(5), 634-663. https://doi.org/10.1111/1574-6976.12028
Mortier, E., Lamotte, O., Martin-Laurent, F., & Recorbet, G. (2020). Forty years of study on interactions between walnut tree and arbuscular mycorrhizal fungi. A review. Agronomy for Sustainable Development, 40, 1-21. https://doi.org/10.1007/s13593-020-00647-y
Nieto, V. M., & Rodríguez, J. (2002). Juglans neotropica Diels. Tropical seeds manual. United States Department of Agriculture Forest Service. USES Öpik, M., Davison, J., Moora, M., & Zobel, M. (2014). DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences. Botany, 92(2), 135-147. https://doi.org/10.1139/cjb-2013-0110
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Williams, G. M., & Ginzel, M. D. (2022). Forest and plantation soil microbiomes differ in their capacity to suppress feedback between Geosmithia morbida and rhizosphere pathogens of Juglans nigra seedlings. Phytobiomes Journal, 6(1), 56-68. https://doi.org/10.1094/PBIOMES-02-21-0014-R
Web, A. D. (2022, 17 mayo). [:ES]Sustrato Pindstrup Pluss Orange[:eN]Substrate Pindstrup Plus Orange[:] - Agronegocios Génesis. Agronegocios Génesis. https://agrogenesis.com/en/agricultural-tool/sustrato-pindstrup-pluss-orange/ accessed 14 December 2023
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spelling Corrales Osorio, Adriana43260206600Carrillo Ramírez, MarianaCorrales Osorio, AdrianaBravo Pedraza, William JavierBiólogoPregradoFull timef4510354-0598-43a8-9c88-060b24b41396-14326020660089964b57-7fa1-4147-a112-26d1de376fb2-12024-04-01T16:32:14Z2024-04-01T16:32:14Z2024-03-22info:eu-repo/date/embargoEnd/2026-04-02Juglans neotropica es una especie arbórea en peligro, amenazada principalmente por la disminución de su hábitat y su alto valor comercial por su producción de madera y nueces, por lo que es urgente encontrar estrategias de conservación para la especie en los ecosistemas sudamericanos. Se sabe que J. neotropica forma relaciones simbióticas con hongos asociados a las raíces, incluidas las micorrizas arbusculares (HMA), que desempeñan un papel fundamental en la supervivencia de las plántulas al mejorar la absorción de nutrientes (Mortier et al. 2020). Normalmente, el microbioma del suelo queda totalmente olvidado cuando se trata de planes de conservación y restauración de ecosistemas, aunque conocemos su importancia para el desarrollo y supervivencia de las plantas. En nuestro estudio, implementamos tres tipos de inóculo nativo de Juglans en el suelo en plántulas de vivero para observar la influencia de esto en el crecimiento de las plántulas. Encontramos que las plántulas de J.neotropica se ven influenciadas positivamente en su crecimiento cuando se siembran con inóculo de suelo nativo de árboles adultos conespecíficos, el cual podría contener un microbioma que puede mejorar su rendimiento, asimismo, encontramos una alta abundancia de fitopatógenos dentro de las muestras correspondientes a plántulas que fueron sembradas con turba estéril comercial. Nuestros resultados resaltan la importancia de incluir el microbioma del suelo en los procesos de propagación para aumentar el crecimiento, la salud y la supervivencia de las plántulas.Juglans neotropica is an Endangered tree species threatened mainly by declines in habitat and its high commercial value for its timber and nut production, and therefore, it is urgent to find conservation strategies for the species in South American ecosystems. J. neotropica is known to form symbiotic relationships with root-associated fungi, including arbuscular mycorrhizae (AMF), which plays a fundamental role in seedling survival by improving nutrient uptake (Mortier et al. 2020). Normally, the soil microbiome is totally forgotten when it comes to ecosystem conservation and restoration plans, even though we know its importance for the development and survival of plants. In our study, we implemented three types of native soil inoculum of Juglans in nursery seedlings to observe the influence of this on seedling growth. We found that the seedlings of J.neotropica are positively influenced in their growth when they are planted with inoculum of native soil from conspecific adult trees, which could contain a microbiome that can improve their yield, likewise, we found a high abundance of phytopathogens within the samples corresponding to seedlings that were planted with commercial sterile peat. Our results highlight the importance of including the soil microbiome in propagation processes to increase seedling growth, health, and survival.Wildlife Conservation Society (WCS)26 ppapplication/pdfhttps://repository.urosario.edu.co/handle/10336/42383engUniversidad del RosarioFacultad de Ciencias NaturalesBiologíaAttribution-NonCommercial-NoDerivatives 4.0 InternationalRestringido (Temporalmente bloqueado)EL AUTOR, manifiesta que la obra objeto de la presente autorización es original y la realizó sin violar o usurpar derechos de autor de terceros, por lo tanto la obra es de exclusiva autoría y tiene la titularidad sobre la misma.http://creativecommons.org/licenses/by-nc-nd/4.0/http://purl.org/coar/access_right/c_f1cfAchatz, M., & Rillig, M. C. (2014). Arbuscular mycorrhizal fungal hyphae enhance transport of the allelochemical juglone in the field. Soil Biology and Biochemistry, 78, 76-82. https://doi.org/10.1016/j.soilbio.2014.07.008Achatz, M., Morris, E. K., Müller, F., Hilker, M., & Rillig, M. C. (2014). Soil hypha‐mediated movement of allelochemicals: arbuscular mycorrhizae extend the bioactive zone of juglone. Functional Ecology, 28(4), 1020-1029. https://doi.org/10.1111/1365-2435.12208Álvarez García, L. López Marentes, S. Manchego Manotas, M. (2022). Delimitación de La Cuenca Cucuana, Precipitación.Americas Regional Workshop (Conservation & Sustainable Management of Trees, Costa Rica, November 1996). 1998. Juglans neotropica. The IUCN Red List of Threatened Species 1998: e.T32078A9672729. https://dx.doi.org/10.2305/IUCN.UK.1998.RLTS.T32078A9672729.en. Accessed on 14 December 2023.Anderson, M. J., Crist, T. O., Chase, J. M., Vellend, M., Inouye, B. D., Freestone, A. L., ... & Swenson, N. G. (2011). Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist. Ecology letters, 14(1), 19-28. https://doi.org/10.1111/j.1461-0248.2010.01552.xArteaga Cuba, M. N., Tafur Santillán, S. M., Pérez Hurtado, G., Pastor Ordinola, S. A., & Batista Mainegra, A. (2020). Caracterización de la colonización por micorrizas en Retrophyllum rospigliossi Pilger en el bosque Huamantanga, Perú. Revista Cubana de Ciencias Forestales, 8(3), 535-549.Askun, T. (2018). Introductory chapter: Fusarium: pathogenicity, infections, diseases, mycotoxins and management. Fusarium: Plant Diseases, Pathogen Diversity, Genetic Diversity, Resistance and Molecular Markers, 1. http://dx.doi.org10.5772/intechopen.76507Bengtsson‐Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., ... & Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in ecology and evolution, 4(10), 914-919. https://doi.org/10.1111/2041-210X.12073Berendsen, R.L., Pieterse, C.M.J., & Bakker, P.A.H.M. (2012). The rhizosphere microbiome and plant health. Trends in Plant Science, 17(8), 478-486. https://doi.org/10.1016/j.tplants.2012.04.001Booth, C. (1971). The genus fusarium. Kew, UK, Commonwealth Mycological Institute.Bothe, H., Turnau, K., & Regvar, M. (2010). The potential role of arbuscular mycorrhizal fungi in protecting endangered plants and habitats. Mycorrhiza, 20, 445-457. https://doi.org/10.1007/s00572-010-0332-4Busby, P. E., Newcombe, G., Neat, A. S., & Averill, C. (2022). Facilitating reforestation through the plant microbiome: Perspectives from the phyllosphere. Annual Review of Phytopathology, 60, 337-356. https://doi.org/10.1146/annurev-phyto-021320-010717Compant, S., Samad, A., Faist, H., & Sessitsch, A. (2019). A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application. Journal of advanced research, 19, 29-37. https://doi.org/10.1016/j.jare.2019.03.004Corrales, A. and DiMartino A. (2022, March 13). 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