Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease

El agua es un recurso esencial en nuestro planeta, especialmente en los entornos de agua dulce, fuente vital tanto para humanos, animales y ecosistemas; además es importante destacar que es un recurso limitado. Sin embargo, dichos entornos se han visto impactados significativamente por la contaminac...

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Tipo de recurso:
Fecha de publicación:
2024
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
spa
OAI Identifier:
oai:repository.urosario.edu.co:10336/43047
Acceso en línea:
https://doi.org/10.48713/10336_43047
https://repository.urosario.edu.co/handle/10336/43047
Palabra clave:
Microbioma
Metagenómica
Ríos
Marcadores moleculares
Agua superficial
Agua residual
Microbiome
Metagenomics
Rivers
Molecular markers
Surface water
Wastewater
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Attribution-NonCommercial-ShareAlike 4.0 International
id EDOCUR2_245bf74139a5cdec327d0208ce44217b
oai_identifier_str oai:repository.urosario.edu.co:10336/43047
network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
dc.title.none.fl_str_mv Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
dc.title.TranslatedTitle.none.fl_str_mv Análisis metagenómicos de aguas superficiales y residuales en el altiplano andino colombiano: implicaciones en salud y enfermedad
title Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
spellingShingle Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
Microbioma
Metagenómica
Ríos
Marcadores moleculares
Agua superficial
Agua residual
Microbiome
Metagenomics
Rivers
Molecular markers
Surface water
Wastewater
title_short Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
title_full Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
title_fullStr Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
title_full_unstemmed Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
title_sort Metagenomic Analyses of Surface Waters and Wastewater in the Colombian Andean Highlands: implications in health and disease
dc.contributor.advisor.none.fl_str_mv Muñoz Díaz, Marina
Ramírez, Juan David
dc.contributor.gruplac.none.fl_str_mv Grupo de Investigaciones Microbiológicas UR (GIMUR)
dc.subject.none.fl_str_mv Microbioma
Metagenómica
Ríos
Marcadores moleculares
Agua superficial
Agua residual
topic Microbioma
Metagenómica
Ríos
Marcadores moleculares
Agua superficial
Agua residual
Microbiome
Metagenomics
Rivers
Molecular markers
Surface water
Wastewater
dc.subject.keyword.none.fl_str_mv Microbiome
Metagenomics
Rivers
Molecular markers
Surface water
Wastewater
description El agua es un recurso esencial en nuestro planeta, especialmente en los entornos de agua dulce, fuente vital tanto para humanos, animales y ecosistemas; además es importante destacar que es un recurso limitado. Sin embargo, dichos entornos se han visto impactados significativamente por la contaminación y degradación generada por las actividades humanas. El objetivo de este estudio fue caracterizar el microbioma de aguas residuales y superficiales del Río Pasto, representando el primer panorama del estado actual de este recurso en las tierras altas andinas del suroeste de Colombia. Para lograr esto, realizamos análisis fisicoquímicos y microbiológicos tradicionales, incluida la detección de material genético de los parásitos protozoarios Giardia spp. y Cryptosporidium spp. Además, utilizamos tecnología Illumina para secuenciar las muestras para análisis metagenómicos. Estos análisis nos permitieron explorar el microbioma de las aguas residuales y superficiales a niveles taxonómicos y funcionales utilizando dos enfoques. El primer enfoque fue a partir de lecturas que revelaron las familias más abundantes en cada punto de muestreo, junto con especies que exhiben características patógenas potenciales, como Aeromonas media, y aquellas con roles potencialmente benéficos, como Polaromonas naphthalenivorans. También se identificaron marcadores moleculares de importancia en salud en cada punto de muestreo, incluidos marcadores de resistencia antimicrobiana como tetraciclinas y aminoglucósidos, así como factores de virulencia. El segundo enfoque involucró el ensamblaje de genomas a partir de metagenomas (MAGs), que condujo a obtener 270 ensamblajes de alta calidad y la identificación de 16 especies bacterianas, que incluyen especies reportadas en heces y nativas del cuerpo, para las cuales se obtuvieron sus perfiles funcionales. Este estudio proporciona información del estado actual del Río Pasto, que abarca tanto las aguas superficiales como las aguas residuales no tratadas, y ofrece una herramienta valiosa para evaluar los riesgos potenciales asociados con el reúso del agua y las implicaciones de la descarga directa de contaminantes en los cuerpos de agua.
publishDate 2024
dc.date.accessioned.none.fl_str_mv 2024-07-17T18:28:04Z
dc.date.available.none.fl_str_mv 2024-07-17T18:28:04Z
dc.date.created.none.fl_str_mv 2024-06-07
dc.type.none.fl_str_mv bachelorThesis
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_7a1f
dc.type.document.none.fl_str_mv Trabajo de grado
dc.type.spa.none.fl_str_mv Trabajo de grado
dc.identifier.doi.none.fl_str_mv https://doi.org/10.48713/10336_43047
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/43047
url https://doi.org/10.48713/10336_43047
https://repository.urosario.edu.co/handle/10336/43047
dc.language.iso.none.fl_str_mv spa
language spa
dc.rights.*.fl_str_mv Attribution-NonCommercial-ShareAlike 4.0 International
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.none.fl_str_mv Abierto (Texto Completo)
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
rights_invalid_str_mv Attribution-NonCommercial-ShareAlike 4.0 International
Abierto (Texto Completo)
http://creativecommons.org/licenses/by-nc-sa/4.0/
http://purl.org/coar/access_right/c_abf2
dc.format.extent.none.fl_str_mv 38 PP
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad del Rosario
dc.publisher.department.none.fl_str_mv Facultad de Ciencias Naturales
dc.publisher.program.none.fl_str_mv Maestría en Ciencias Naturales
publisher.none.fl_str_mv Universidad del Rosario
institution Universidad del Rosario
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spelling Muñoz Díaz, Marina11e33b66-c06e-405c-9a7d-cbb5b723fd32-1Ramírez, Juan David1011716118-1Grupo de Investigaciones Microbiológicas UR (GIMUR)Urrea Messa, Vanessa del PilarMagíster en Ciencias NaturalesMaestríaFull time1a1bee0c-4845-4e53-a9a4-f04ac3ceca13-12024-07-17T18:28:04Z2024-07-17T18:28:04Z2024-06-07El agua es un recurso esencial en nuestro planeta, especialmente en los entornos de agua dulce, fuente vital tanto para humanos, animales y ecosistemas; además es importante destacar que es un recurso limitado. Sin embargo, dichos entornos se han visto impactados significativamente por la contaminación y degradación generada por las actividades humanas. El objetivo de este estudio fue caracterizar el microbioma de aguas residuales y superficiales del Río Pasto, representando el primer panorama del estado actual de este recurso en las tierras altas andinas del suroeste de Colombia. Para lograr esto, realizamos análisis fisicoquímicos y microbiológicos tradicionales, incluida la detección de material genético de los parásitos protozoarios Giardia spp. y Cryptosporidium spp. Además, utilizamos tecnología Illumina para secuenciar las muestras para análisis metagenómicos. Estos análisis nos permitieron explorar el microbioma de las aguas residuales y superficiales a niveles taxonómicos y funcionales utilizando dos enfoques. El primer enfoque fue a partir de lecturas que revelaron las familias más abundantes en cada punto de muestreo, junto con especies que exhiben características patógenas potenciales, como Aeromonas media, y aquellas con roles potencialmente benéficos, como Polaromonas naphthalenivorans. También se identificaron marcadores moleculares de importancia en salud en cada punto de muestreo, incluidos marcadores de resistencia antimicrobiana como tetraciclinas y aminoglucósidos, así como factores de virulencia. El segundo enfoque involucró el ensamblaje de genomas a partir de metagenomas (MAGs), que condujo a obtener 270 ensamblajes de alta calidad y la identificación de 16 especies bacterianas, que incluyen especies reportadas en heces y nativas del cuerpo, para las cuales se obtuvieron sus perfiles funcionales. Este estudio proporciona información del estado actual del Río Pasto, que abarca tanto las aguas superficiales como las aguas residuales no tratadas, y ofrece una herramienta valiosa para evaluar los riesgos potenciales asociados con el reúso del agua y las implicaciones de la descarga directa de contaminantes en los cuerpos de agua.Freshwater is an essential resource on our planet; however, human activities have significantly impacted it. This study aimed to assess the microbiome of Pasto River's wastewater and surface waters in the southwestern Colombian Andean highlands. Traditional physicochemical and microbiological analyses, alongside Giardia spp. and Cryptosporidium spp parasites were detected by real time PCR. Illumina technology was used for metagenomic analyses. allowing to explore both taxonomic and functional profiling using two approaches. The first approach was from reads reveling the most abundant families, along with species exhibiting potential pathogenic characteristics, like Aeromonas media, and those with potential beneficial roles, such as Polaromonas naphthalenivorans. It also uncovered molecular markers of health significance, including common antimicrobial resistances markers linked to tetracyclines and aminoglycosides, as well as virulence factors. The second approach involved genome assembly using metagenomic data, leading to 270 high-quality assemblies and the identification of 16 bacterial species, encompassing both fecal-derived and water-body-native species, including insights into their functional relationships. 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