Drivers of HIV-1 transmission: The Portuguese case

Background Portugal has one of the most severe HIV-1 epidemics in Western Europe. Two subtypes circulate in parallel since the beginning of the epidemic. Comparing their transmission patterns and its association with transmitted drug resistance (TDR) is important to pinpoint transmission hotspots an...

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Tipo de recurso:
Fecha de publicación:
2019
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/22836
Acceso en línea:
https://doi.org/10.1371/journal.pone.0218226
https://repository.urosario.edu.co/handle/10336/22836
Palabra clave:
Human immunodeficiency virus proteinase inhibitor
Nonnucleoside reverse transcriptase inhibitor
RNA directed DNA polymerase inhibitor
Adult
Age
Antiviral resistance
Article
Cohort analysis
Controlled study
Demography
Epidemic
Female
Genomics
Heterosexuality
Human
Human immunodeficiency virus 1 infection
Major clinical study
Male
Portugal
Portuguese (citizen)
Prevalence
Sex difference
Virus transmission
Drug effect
Follow up
Genetics
Genotype
Health survey
Highly active antiretroviral therapy
Human immunodeficiency virus 1
Human immunodeficiency virus infection
Odds ratio
Sex factor
Socioeconomics
Virology
Young adult
Age Factors
Female
Follow-Up Studies
Genotype
HIV Infections
HIV-1
Humans
Male
Odds Ratio
Portugal
Prevalence
Public Health Surveillance
Sex Factors
Socioeconomic Factors
Young Adult
Highly Active
Viral
Antiretroviral Therapy
Drug Resistance
Rights
License
Abierto (Texto Completo)
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dc.title.spa.fl_str_mv Drivers of HIV-1 transmission: The Portuguese case
title Drivers of HIV-1 transmission: The Portuguese case
spellingShingle Drivers of HIV-1 transmission: The Portuguese case
Human immunodeficiency virus proteinase inhibitor
Nonnucleoside reverse transcriptase inhibitor
RNA directed DNA polymerase inhibitor
Adult
Age
Antiviral resistance
Article
Cohort analysis
Controlled study
Demography
Epidemic
Female
Genomics
Heterosexuality
Human
Human immunodeficiency virus 1 infection
Major clinical study
Male
Portugal
Portuguese (citizen)
Prevalence
Sex difference
Virus transmission
Drug effect
Follow up
Genetics
Genotype
Health survey
Highly active antiretroviral therapy
Human immunodeficiency virus 1
Human immunodeficiency virus infection
Odds ratio
Sex factor
Socioeconomics
Virology
Young adult
Age Factors
Female
Follow-Up Studies
Genotype
HIV Infections
HIV-1
Humans
Male
Odds Ratio
Portugal
Prevalence
Public Health Surveillance
Sex Factors
Socioeconomic Factors
Young Adult
Highly Active
Viral
Antiretroviral Therapy
Drug Resistance
title_short Drivers of HIV-1 transmission: The Portuguese case
title_full Drivers of HIV-1 transmission: The Portuguese case
title_fullStr Drivers of HIV-1 transmission: The Portuguese case
title_full_unstemmed Drivers of HIV-1 transmission: The Portuguese case
title_sort Drivers of HIV-1 transmission: The Portuguese case
dc.subject.keyword.spa.fl_str_mv Human immunodeficiency virus proteinase inhibitor
Nonnucleoside reverse transcriptase inhibitor
RNA directed DNA polymerase inhibitor
Adult
Age
Antiviral resistance
Article
Cohort analysis
Controlled study
Demography
Epidemic
Female
Genomics
Heterosexuality
Human
Human immunodeficiency virus 1 infection
Major clinical study
Male
Portugal
Portuguese (citizen)
Prevalence
Sex difference
Virus transmission
Drug effect
Follow up
Genetics
Genotype
Health survey
Highly active antiretroviral therapy
Human immunodeficiency virus 1
Human immunodeficiency virus infection
Odds ratio
Sex factor
Socioeconomics
Virology
Young adult
Age Factors
Female
Follow-Up Studies
Genotype
HIV Infections
HIV-1
Humans
Male
Odds Ratio
Portugal
Prevalence
Public Health Surveillance
Sex Factors
Socioeconomic Factors
Young Adult
topic Human immunodeficiency virus proteinase inhibitor
Nonnucleoside reverse transcriptase inhibitor
RNA directed DNA polymerase inhibitor
Adult
Age
Antiviral resistance
Article
Cohort analysis
Controlled study
Demography
Epidemic
Female
Genomics
Heterosexuality
Human
Human immunodeficiency virus 1 infection
Major clinical study
Male
Portugal
Portuguese (citizen)
Prevalence
Sex difference
Virus transmission
Drug effect
Follow up
Genetics
Genotype
Health survey
Highly active antiretroviral therapy
Human immunodeficiency virus 1
Human immunodeficiency virus infection
Odds ratio
Sex factor
Socioeconomics
Virology
Young adult
Age Factors
Female
Follow-Up Studies
Genotype
HIV Infections
HIV-1
Humans
Male
Odds Ratio
Portugal
Prevalence
Public Health Surveillance
Sex Factors
Socioeconomic Factors
Young Adult
Highly Active
Viral
Antiretroviral Therapy
Drug Resistance
dc.subject.keyword.eng.fl_str_mv Highly Active
Viral
Antiretroviral Therapy
Drug Resistance
description Background Portugal has one of the most severe HIV-1 epidemics in Western Europe. Two subtypes circulate in parallel since the beginning of the epidemic. Comparing their transmission patterns and its association with transmitted drug resistance (TDR) is important to pinpoint transmission hotspots and to develop evidence-based treatment guidelines. Methods Demographic, clinical and genomic data were collected from 3599 HIV-1 naive patients between 2001 and 2014. Sequences obtained from drug resistance testing were used for subtyping, TDR determination and transmission clusters (TC) analyses. Results In Portugal, transmission of subtype B was significantly associated with young males, while transmission of subtype G was associated with older heterosexuals. In Portuguese originated people, there was a decreasing trend both for prevalence of subtype G and for number of TCs in this subtype. The active TCs that were identified (i.e. clusters originated after 2008) were associated with subtype B-infected males residing in Lisbon. TDR was significantly different when comparing subtypes B (10.8% [9.5–12.2]) and G (7.6% [6.4–9.0]) (p = 0.001). Discussion TC analyses shows that, in Portugal, the subtype B epidemic is active and fueled by young male patients residing in Lisbon, while transmission of subtype G is decreasing. Despite similar treatment rates for both subtypes in Portugal, TDR is significantly different between subtypes. © 2019 Pineda-Peña et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
publishDate 2019
dc.date.created.spa.fl_str_mv 2019
dc.date.accessioned.none.fl_str_mv 2020-05-25T23:58:18Z
dc.date.available.none.fl_str_mv 2020-05-25T23:58:18Z
dc.type.eng.fl_str_mv article
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dc.identifier.doi.none.fl_str_mv https://doi.org/10.1371/journal.pone.0218226
dc.identifier.issn.none.fl_str_mv 19326203
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/22836
url https://doi.org/10.1371/journal.pone.0218226
https://repository.urosario.edu.co/handle/10336/22836
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dc.language.iso.spa.fl_str_mv eng
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dc.relation.citationIssue.none.fl_str_mv No. 9
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dc.relation.ispartof.spa.fl_str_mv PLoS ONE, ISSN:19326203, Vol.14, No.9 (2019)
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spelling 9b02898b-c882-467c-81df-625db337b206-1fccbef2a-d710-4b64-a586-8aec0da2ef1b-1b0bdd6f6-5cc3-486f-9015-590eaa740e3c-10c24a089-c4b4-4846-839e-e75c6f6f8192-122ccc596-fd94-4bac-b23f-1102a1fe0d9c-12146fa94-5cd4-4a82-99e3-b67f55feb975-175a996c2-8259-43fd-8abe-bde4eb5b81e8-1138d54f6-bf1d-454c-b349-39e187694657-1036f2add-b9b2-40f9-929d-9fd4bee1fd33-12020-05-25T23:58:18Z2020-05-25T23:58:18Z2019Background Portugal has one of the most severe HIV-1 epidemics in Western Europe. Two subtypes circulate in parallel since the beginning of the epidemic. Comparing their transmission patterns and its association with transmitted drug resistance (TDR) is important to pinpoint transmission hotspots and to develop evidence-based treatment guidelines. Methods Demographic, clinical and genomic data were collected from 3599 HIV-1 naive patients between 2001 and 2014. Sequences obtained from drug resistance testing were used for subtyping, TDR determination and transmission clusters (TC) analyses. Results In Portugal, transmission of subtype B was significantly associated with young males, while transmission of subtype G was associated with older heterosexuals. In Portuguese originated people, there was a decreasing trend both for prevalence of subtype G and for number of TCs in this subtype. The active TCs that were identified (i.e. clusters originated after 2008) were associated with subtype B-infected males residing in Lisbon. TDR was significantly different when comparing subtypes B (10.8% [9.5–12.2]) and G (7.6% [6.4–9.0]) (p = 0.001). Discussion TC analyses shows that, in Portugal, the subtype B epidemic is active and fueled by young male patients residing in Lisbon, while transmission of subtype G is decreasing. Despite similar treatment rates for both subtypes in Portugal, TDR is significantly different between subtypes. © 2019 Pineda-Peña et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.application/pdfhttps://doi.org/10.1371/journal.pone.021822619326203https://repository.urosario.edu.co/handle/10336/22836engPublic Library of ScienceNo. 9PLoS ONEVol. 14PLoS ONE, ISSN:19326203, Vol.14, No.9 (2019)https://www.scopus.com/inward/record.uri?eid=2-s2.0-85072733890&doi=10.1371%2fjournal.pone.0218226&partnerID=40&md5=3e17f0f925edacb6c422c58435cc3547Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURHuman immunodeficiency virus proteinase inhibitorNonnucleoside reverse transcriptase inhibitorRNA directed DNA polymerase inhibitorAdultAgeAntiviral resistanceArticleCohort analysisControlled studyDemographyEpidemicFemaleGenomicsHeterosexualityHumanHuman immunodeficiency virus 1 infectionMajor clinical studyMalePortugalPortuguese (citizen)PrevalenceSex differenceVirus transmissionDrug effectFollow upGeneticsGenotypeHealth surveyHighly active antiretroviral therapyHuman immunodeficiency virus 1Human immunodeficiency virus infectionOdds ratioSex factorSocioeconomicsVirologyYoung adultAge FactorsFemaleFollow-Up StudiesGenotypeHIV InfectionsHIV-1HumansMaleOdds RatioPortugalPrevalencePublic Health SurveillanceSex FactorsSocioeconomic FactorsYoung AdultHighly ActiveViralAntiretroviral TherapyDrug ResistanceDrivers of HIV-1 transmission: The Portuguese casearticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Pineda-Peña, Andrea-ClemenciaPingarilho, MartaLi, GuangdiVrancken, BramLibin, PieterGomes, PerpétuaCamacho, Ricardo JorgeTheys, KristofAbecasis, Ana BarrosoORIGINALjournal-pone-0218226.pdfapplication/pdf1147334https://repository.urosario.edu.co/bitstreams/b93cfdd2-f35c-4116-a29b-6c101c7c0754/downloade3ecae5e3eb730449441a7032c2d7d81MD51TEXTjournal-pone-0218226.pdf.txtjournal-pone-0218226.pdf.txtExtracted texttext/plain46724https://repository.urosario.edu.co/bitstreams/b2a89b62-b9fd-4ace-bd41-94bbc1aa3b8c/download94fbcc67423ab2cc57f85c1fa9b09885MD52THUMBNAILjournal-pone-0218226.pdf.jpgjournal-pone-0218226.pdf.jpgGenerated Thumbnailimage/jpeg4204https://repository.urosario.edu.co/bitstreams/0a7d5e1c-4a1d-4bc6-8ec9-14ebcc5838f9/downloadc3b02df2a121759196238d64a50d688bMD5310336/22836oai:repository.urosario.edu.co:10336/228362022-05-02 07:37:20.794075https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co