Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1

Non-coding RNAs are a complex class of nucleic acids, with growing evidence supporting regulatory roles in gene expression. Here we identify a non-coding RNA located head-to-head with the gene encoding the Glioma-associated oncogene 1 (GLI1), a transcriptional effector of multiple cancer-associated...

Full description

Autores:
Tipo de recurso:
Fecha de publicación:
2014
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/18719
Acceso en línea:
http://repository.urosario.edu.co/handle/10336/18719
Palabra clave:
Cancer
Chromatin
Gene Expression
Gli1
Non-Coding Rna
Transcription
Complementary Rna
Protein Patched 1
Protein Patched 2
Rna Polymerase Ii
Small Interfering Rna
Sonic Hedgehog Protein
Transcription Factor Gli1
Untranslated Rna
Chromatin
Gli Protein
Oncoprotein
Rna Polymerase Ii
Sonic Hedgehog Protein
Transactivator Protein
Transforming Growth Factor Beta
Untranslated Rna
Transforming Growth Factor Beta
Article
Breast Cancer
Breast Fibroadenoma
Cancer Cell
Cell Proliferation
Chromatin Assembly And Disassembly
Chromatin Immunoprecipitation
Chromatin Structure
Chromosome 21Q
Comparative Study
Controlled Study
Down Regulation
Exon
Gene Expression
Gene Silencing
Genetic Transfection
Human
Human Tissue
Negative Feedback
Nucleotide Sequence
Oncogene
Polyadenylation
Priority Journal
Promoter Region
Regulatory Mechanism
Rna Sequence
Signal Transduction
Transcription Initiation Site
Tumor Growth
Upregulation
Chromatin
Gene Expression Regulation
Genetics
Metabolism
Neoplasm
Pathology
Transcription Initiation
Tumor Cell Line
Article
Genetic Transcription
Human Cell
Erinaceidae
Cell Line, Tumor
Chromatin
Gene Expression Regulation, Neoplastic
Hedgehog Proteins
Humans
Neoplasms
Oncogene Proteins
Rna Polymerase Ii
Rna, Untranslated
Signal Transduction
Trans-Activators
Transcriptional Activation
Transforming Growth Factor Beta
Cromatina
Expresión genética
Cáncer
Rights
License
Abierto (Texto Completo)
id EDOCUR2_1a5e487d4bf8085942fb3c2387b6499d
oai_identifier_str oai:repository.urosario.edu.co:10336/18719
network_acronym_str EDOCUR2
network_name_str Repositorio EdocUR - U. Rosario
repository_id_str
dc.title.spa.fl_str_mv Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
title Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
spellingShingle Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
Cancer
Chromatin
Gene Expression
Gli1
Non-Coding Rna
Transcription
Complementary Rna
Protein Patched 1
Protein Patched 2
Rna Polymerase Ii
Small Interfering Rna
Sonic Hedgehog Protein
Transcription Factor Gli1
Untranslated Rna
Chromatin
Gli Protein
Oncoprotein
Rna Polymerase Ii
Sonic Hedgehog Protein
Transactivator Protein
Transforming Growth Factor Beta
Untranslated Rna
Transforming Growth Factor Beta
Article
Breast Cancer
Breast Fibroadenoma
Cancer Cell
Cell Proliferation
Chromatin Assembly And Disassembly
Chromatin Immunoprecipitation
Chromatin Structure
Chromosome 21Q
Comparative Study
Controlled Study
Down Regulation
Exon
Gene Expression
Gene Silencing
Genetic Transfection
Human
Human Tissue
Negative Feedback
Nucleotide Sequence
Oncogene
Polyadenylation
Priority Journal
Promoter Region
Regulatory Mechanism
Rna Sequence
Signal Transduction
Transcription Initiation Site
Tumor Growth
Upregulation
Chromatin
Gene Expression Regulation
Genetics
Metabolism
Neoplasm
Pathology
Transcription Initiation
Tumor Cell Line
Article
Genetic Transcription
Human Cell
Erinaceidae
Cell Line, Tumor
Chromatin
Gene Expression Regulation, Neoplastic
Hedgehog Proteins
Humans
Neoplasms
Oncogene Proteins
Rna Polymerase Ii
Rna, Untranslated
Signal Transduction
Trans-Activators
Transcriptional Activation
Transforming Growth Factor Beta
Cromatina
Expresión genética
Cáncer
title_short Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
title_full Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
title_fullStr Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
title_full_unstemmed Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
title_sort Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1
dc.subject.spa.fl_str_mv Cancer
Chromatin
Gene Expression
Gli1
Non-Coding Rna
Transcription
topic Cancer
Chromatin
Gene Expression
Gli1
Non-Coding Rna
Transcription
Complementary Rna
Protein Patched 1
Protein Patched 2
Rna Polymerase Ii
Small Interfering Rna
Sonic Hedgehog Protein
Transcription Factor Gli1
Untranslated Rna
Chromatin
Gli Protein
Oncoprotein
Rna Polymerase Ii
Sonic Hedgehog Protein
Transactivator Protein
Transforming Growth Factor Beta
Untranslated Rna
Transforming Growth Factor Beta
Article
Breast Cancer
Breast Fibroadenoma
Cancer Cell
Cell Proliferation
Chromatin Assembly And Disassembly
Chromatin Immunoprecipitation
Chromatin Structure
Chromosome 21Q
Comparative Study
Controlled Study
Down Regulation
Exon
Gene Expression
Gene Silencing
Genetic Transfection
Human
Human Tissue
Negative Feedback
Nucleotide Sequence
Oncogene
Polyadenylation
Priority Journal
Promoter Region
Regulatory Mechanism
Rna Sequence
Signal Transduction
Transcription Initiation Site
Tumor Growth
Upregulation
Chromatin
Gene Expression Regulation
Genetics
Metabolism
Neoplasm
Pathology
Transcription Initiation
Tumor Cell Line
Article
Genetic Transcription
Human Cell
Erinaceidae
Cell Line, Tumor
Chromatin
Gene Expression Regulation, Neoplastic
Hedgehog Proteins
Humans
Neoplasms
Oncogene Proteins
Rna Polymerase Ii
Rna, Untranslated
Signal Transduction
Trans-Activators
Transcriptional Activation
Transforming Growth Factor Beta
Cromatina
Expresión genética
Cáncer
dc.subject.decs.spa.fl_str_mv Complementary Rna
Protein Patched 1
Protein Patched 2
Rna Polymerase Ii
Small Interfering Rna
Sonic Hedgehog Protein
Transcription Factor Gli1
Untranslated Rna
Chromatin
Gli Protein
Oncoprotein
Rna Polymerase Ii
Sonic Hedgehog Protein
Transactivator Protein
Transforming Growth Factor Beta
Untranslated Rna
Transforming Growth Factor Beta
Article
Breast Cancer
Breast Fibroadenoma
Cancer Cell
Cell Proliferation
Chromatin Assembly And Disassembly
Chromatin Immunoprecipitation
Chromatin Structure
Chromosome 21Q
Comparative Study
Controlled Study
Down Regulation
Exon
Gene Expression
Gene Silencing
Genetic Transfection
Human
Human Tissue
Negative Feedback
Nucleotide Sequence
Oncogene
Polyadenylation
Priority Journal
Promoter Region
Regulatory Mechanism
Rna Sequence
Signal Transduction
Transcription Initiation Site
Tumor Growth
Upregulation
Chromatin
Gene Expression Regulation
Genetics
Metabolism
Neoplasm
Pathology
Transcription Initiation
Tumor Cell Line
Article
Genetic Transcription
Human Cell
Erinaceidae
Cell Line, Tumor
Chromatin
Gene Expression Regulation, Neoplastic
Hedgehog Proteins
Humans
Neoplasms
Oncogene Proteins
Rna Polymerase Ii
Rna, Untranslated
Signal Transduction
Trans-Activators
Transcriptional Activation
Transforming Growth Factor Beta
dc.subject.lemb.spa.fl_str_mv Cromatina
Expresión genética
Cáncer
description Non-coding RNAs are a complex class of nucleic acids, with growing evidence supporting regulatory roles in gene expression. Here we identify a non-coding RNA located head-to-head with the gene encoding the Glioma-associated oncogene 1 (GLI1), a transcriptional effector of multiple cancer-associated signaling pathways. The expression of this three-exon GLI1 antisense (GLI1AS) RNA in cancer cells was concordant with GLI1 levels. siRNAs knockdown of GLI1AS up-regulated GLI1 and increased cellular proliferation and tumor growth in a xenograft model system. Conversely, GLI1AS overexpression decreased the levels of GLI1, its target genes PTCH1 and PTCH2, and cellular proliferation. Additionally, we demonstrate that GLI1 knockdown reduced GLI1AS, while GLI1 overexpression increased GLI1AS, supporting the role of GLI1AS as a target gene of the GLI1 transcription factor. Activation of TGFβ and Hedgehog signaling, two known regulators of GLI1 expression, conferred a concordant up-regulation of GLI1 and GLI1AS in cancer cells. Finally, analysis of the mechanism underlying the interplay between GLI1 and GLI1AS indicates that the non-coding RNA elicits a local alteration of chromatin structure by increasing the silencing mark H3K27me3 and decreasing the recruitment of RNA polymerase II to this locus. Taken together, the data demonstrate the existence of a novel non-coding RNA-based negative feedback loop controlling GLI1 levels, thus expanding the repertoire of mechanisms regulating the expression of this oncogenic transcription factor © 2014 Federation of European Biochemical Societies.
publishDate 2014
dc.date.created.none.fl_str_mv 2014
dc.date.issued.none.fl_str_mv 2014
dc.date.accessioned.none.fl_str_mv 2018-11-21T16:32:41Z
dc.date.available.none.fl_str_mv 2018-11-21T16:32:41Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.issn.none.fl_str_mv ISSN 1574-7891
dc.identifier.uri.none.fl_str_mv http://repository.urosario.edu.co/handle/10336/18719
identifier_str_mv ISSN 1574-7891
url http://repository.urosario.edu.co/handle/10336/18719
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationEndPage.none.fl_str_mv 926
dc.relation.citationIssue.none.fl_str_mv No. 5
dc.relation.citationStartPage.none.fl_str_mv 912
dc.relation.citationTitle.none.fl_str_mv Molecular Oncology
dc.relation.citationVolume.none.fl_str_mv Vol. 8
dc.relation.ispartof.spa.fl_str_mv Molecular Oncology, ISSN: 1574-7891, Vol. 8/No. 5 (2014) pp. 912-926
dc.relation.uri.spa.fl_str_mv https://febs.onlinelibrary.wiley.com/doi/epdf/10.1016/j.molonc.2014.03.009
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.spa.fl_str_mv Abierto (Texto Completo)
dc.rights.cc.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
rights_invalid_str_mv Abierto (Texto Completo)
https://creativecommons.org/licenses/by-nc-nd/4.0/
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv application/pdf
institution Universidad del Rosario
dc.source.bibliographicCitation.spa.fl_str_mv Berretta, J., Pinskaya, M., Morillon, A., A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae (2008) Genes Dev., 22, pp. 615-626
dc.source.instname.none.fl_str_mv instname:Universidad del Rosario
dc.source.reponame.none.fl_str_mv reponame:Repositorio Institucional EdocUR
bitstream.url.fl_str_mv https://repository.urosario.edu.co/bitstreams/10faa6fc-1d19-42fe-a2a1-eaf1bedc0c3c/download
https://repository.urosario.edu.co/bitstreams/da298855-5920-4232-9b09-ae633ea7a736/download
https://repository.urosario.edu.co/bitstreams/bb8fe938-86a2-4ec2-9c04-416aca9628d3/download
bitstream.checksum.fl_str_mv b51b8f825c2bcb6a507105d3bf6c33f2
a6f22c1be29730ab5f4850a0555b177c
d46a3454720d5904b0ee024e8d404ca4
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio institucional EdocUR
repository.mail.fl_str_mv edocur@urosario.edu.co
_version_ 1808390960204218368
spelling 315275506007ea73aa9-5d1d-4326-bdba-2c9eef01f796600f84c0817-f042-44f4-b4c2-1e5ae6a230b66009600ec8b-9c34-4d04-85d5-9f8e4253eaa3600fdab226a-cb83-4d49-8833-89bcd47caa4e6008ba6c72c-9ea7-4ff6-b557-f7abf5b8ea386006f858fbb-4b79-45d6-97a4-b58b65c567cf6001a9b60f0-df37-4def-ae58-fd716a43e4b16007cdcba91-34dc-4af2-a293-73f624cb437a6002d7e8bea-4138-447d-b84c-0182522e38616005186625160063773d4d-c6a7-436a-b036-8f122be99b58600fcea3938-cc7a-4915-ac00-824bde20266a600673b56aa-d468-4090-8ee7-d50f5ae781a16002aacd760-9e2e-408b-84e2-b13008346c1b6005d3ee29e-7fbf-4c05-9336-d171cceeda5b6002ae6ba9e-2515-414d-99aa-e9a97aee2c776002018-11-21T16:32:41Z2018-11-21T16:32:41Z20142014Non-coding RNAs are a complex class of nucleic acids, with growing evidence supporting regulatory roles in gene expression. Here we identify a non-coding RNA located head-to-head with the gene encoding the Glioma-associated oncogene 1 (GLI1), a transcriptional effector of multiple cancer-associated signaling pathways. The expression of this three-exon GLI1 antisense (GLI1AS) RNA in cancer cells was concordant with GLI1 levels. siRNAs knockdown of GLI1AS up-regulated GLI1 and increased cellular proliferation and tumor growth in a xenograft model system. Conversely, GLI1AS overexpression decreased the levels of GLI1, its target genes PTCH1 and PTCH2, and cellular proliferation. Additionally, we demonstrate that GLI1 knockdown reduced GLI1AS, while GLI1 overexpression increased GLI1AS, supporting the role of GLI1AS as a target gene of the GLI1 transcription factor. Activation of TGFβ and Hedgehog signaling, two known regulators of GLI1 expression, conferred a concordant up-regulation of GLI1 and GLI1AS in cancer cells. Finally, analysis of the mechanism underlying the interplay between GLI1 and GLI1AS indicates that the non-coding RNA elicits a local alteration of chromatin structure by increasing the silencing mark H3K27me3 and decreasing the recruitment of RNA polymerase II to this locus. Taken together, the data demonstrate the existence of a novel non-coding RNA-based negative feedback loop controlling GLI1 levels, thus expanding the repertoire of mechanisms regulating the expression of this oncogenic transcription factor © 2014 Federation of European Biochemical Societies.application/pdfISSN 1574-7891http://repository.urosario.edu.co/handle/10336/18719eng926No. 5912Molecular OncologyVol. 8Molecular Oncology, ISSN: 1574-7891, Vol. 8/No. 5 (2014) pp. 912-926https://febs.onlinelibrary.wiley.com/doi/epdf/10.1016/j.molonc.2014.03.009Abierto (Texto Completo)https://creativecommons.org/licenses/by-nc-nd/4.0/http://purl.org/coar/access_right/c_abf2Berretta, J., Pinskaya, M., Morillon, A., A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae (2008) Genes Dev., 22, pp. 615-626instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURCancerChromatinGene ExpressionGli1Non-Coding RnaTranscriptionComplementary RnaProtein Patched 1Protein Patched 2Rna Polymerase IiSmall Interfering RnaSonic Hedgehog ProteinTranscription Factor Gli1Untranslated RnaChromatinGli ProteinOncoproteinRna Polymerase IiSonic Hedgehog ProteinTransactivator ProteinTransforming Growth Factor BetaUntranslated RnaTransforming Growth Factor BetaArticleBreast CancerBreast FibroadenomaCancer CellCell ProliferationChromatin Assembly And DisassemblyChromatin ImmunoprecipitationChromatin StructureChromosome 21QComparative StudyControlled StudyDown RegulationExonGene ExpressionGene SilencingGenetic TransfectionHumanHuman TissueNegative FeedbackNucleotide SequenceOncogenePolyadenylationPriority JournalPromoter RegionRegulatory MechanismRna SequenceSignal TransductionTranscription Initiation SiteTumor GrowthUpregulationChromatinGene Expression RegulationGeneticsMetabolismNeoplasmPathologyTranscription InitiationTumor Cell LineArticleGenetic TranscriptionHuman CellErinaceidaeCell Line, TumorChromatinGene Expression Regulation, NeoplasticHedgehog ProteinsHumansNeoplasmsOncogene ProteinsRna Polymerase IiRna, UntranslatedSignal TransductionTrans-ActivatorsTranscriptional ActivationTransforming Growth Factor BetaCromatinaExpresión genéticaCáncerIdentification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1articleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Villegas Gálvez, Victoria EugeniaRahman, Mohammed Ferdous-UrFernandez-Barrena, Maite G.Diao, YumeiLiapi, EleniSonkoly, EnikoStahle, MonaPivarcsi, AndorAnnaratone, LauraSapino, AnnaRamírez Clavijo, Sandra RocíoBurglin, Thomas R.Shimokawa, TakashiRamachandran, SaraswathiKapranov, PhilippFernandez-Zapico, Martin E.Zaphiropoulos, Peter G.Villegas, Victoria E.Rahman, Mohammed Ferdous-UrFernandez-Barrena, Maite G.Diao, YumeiLiapi, EleniSonkoly, EnikoSonkoly, EnikoRamırez Clavijo, SandraShimokawa, TakashiRamachandran, SaraswathiKapranov, PhilippFernandez-Zapico, Martin E.Zaphiropoulos, Peter G.ORIGINAL124.pdfapplication/pdf2260649https://repository.urosario.edu.co/bitstreams/10faa6fc-1d19-42fe-a2a1-eaf1bedc0c3c/downloadb51b8f825c2bcb6a507105d3bf6c33f2MD51TEXT124.pdf.txt124.pdf.txtExtracted texttext/plain59532https://repository.urosario.edu.co/bitstreams/da298855-5920-4232-9b09-ae633ea7a736/downloada6f22c1be29730ab5f4850a0555b177cMD52THUMBNAIL124.pdf.jpg124.pdf.jpgGenerated Thumbnailimage/jpeg4633https://repository.urosario.edu.co/bitstreams/bb8fe938-86a2-4ec2-9c04-416aca9628d3/downloadd46a3454720d5904b0ee024e8d404ca4MD5310336/18719oai:repository.urosario.edu.co:10336/187192019-09-19 07:38:03.190837https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co