Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia

Background Colombia has one of the highest burdens of arboviruses in South America. The country was in a state of hyperendemicity between 2014 and 2016, with co-circulation of several Aedes- borne viruses, including a syndemic of dengue, chikungunya, and Zika in 2015. Methodology/Principal findings...

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Autores:
Picinini, Lais
Carabali, Mabel
Yuan, Mengru
Jaramillo Ramírez, Gloria Isabel
García Balaguera, César
Restrepo, Berta
Zinser, Kate
Tipo de recurso:
Article of investigation
Fecha de publicación:
2022
Institución:
Universidad Cooperativa de Colombia
Repositorio:
Repositorio UCC
Idioma:
OAI Identifier:
oai:repository.ucc.edu.co:20.500.12494/46669
Acceso en línea:
https://doi.org/10.1371/journal.pntd.0010334
https://hdl.handle.net/20.500.12494/46669
Palabra clave:
Arbovirus; salud pública, cluster temporal; distribución
Rights
openAccess
License
Atribución
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dc.title.spa.fl_str_mv Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
title Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
spellingShingle Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
Arbovirus; salud pública, cluster temporal; distribución
title_short Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
title_full Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
title_fullStr Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
title_full_unstemmed Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
title_sort Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia
dc.creator.fl_str_mv Picinini, Lais
Carabali, Mabel
Yuan, Mengru
Jaramillo Ramírez, Gloria Isabel
García Balaguera, César
Restrepo, Berta
Zinser, Kate
dc.contributor.author.none.fl_str_mv Picinini, Lais
Carabali, Mabel
Yuan, Mengru
Jaramillo Ramírez, Gloria Isabel
García Balaguera, César
Restrepo, Berta
Zinser, Kate
dc.subject.spa.fl_str_mv Arbovirus; salud pública, cluster temporal; distribución
topic Arbovirus; salud pública, cluster temporal; distribución
description Background Colombia has one of the highest burdens of arboviruses in South America. The country was in a state of hyperendemicity between 2014 and 2016, with co-circulation of several Aedes- borne viruses, including a syndemic of dengue, chikungunya, and Zika in 2015. Methodology/Principal findings We analyzed the cases of dengue, chikungunya, and Zika notified in Colombia from January 2014 to December 2018 by municipality and week. The trajectory and velocity of spread was studied using trend surface analysis, and spatio-temporal high-risk clusters for each disease in separate and for the three diseases simultaneously (multivariate) were identified using Kulldorff’s scan statistics. During the study period, there were 366,628, 77,345 and 74,793 cases of dengue, chikungunya, and Zika, respectively, in Colombia. The spread pat- terns for chikungunya and Zika were similar, although Zika’s spread was accelerated. Both chikungunya and Zika mainly spread from the regions on the Atlantic coast and the south- west to the rest of the country. We identified 21, 16, and 13 spatio-temporal clusters of den- gue, chikungunya and Zika, respectively, and, from the multivariate analysis, 20 spatio-tem- poral clusters, among which 7 were simultaneous for the three diseases. For all disease- specific analyses and the multivariate analysis, the most-likely cluster was identified in the south-western region of Colombia, including the Valle del Cauca department. Conclusions/Significance The results further our understanding of emerging Aedes-borne diseases in Colombia by providing useful evidence on their potential site of entry and spread trajectory within the country, and identifying spatio-temporal disease-specific and multivariate high-risk clusters of dengue, chikungunya, and Zika, information that can be used to target interventions.
publishDate 2022
dc.date.accessioned.none.fl_str_mv 2022-10-10T16:45:47Z
dc.date.available.none.fl_str_mv 2022-10-10T16:45:47Z
dc.date.issued.none.fl_str_mv 2022-08-23
dc.type.none.fl_str_mv Artículos Científicos
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dc.identifier.uri.spa.fl_str_mv https://doi.org/10.1371/journal.pntd.0010334
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12494/46669
dc.identifier.bibliographicCitation.spa.fl_str_mv Freitas LP, Carabali M, Yuan M, Jaramillo- Ramirez GI, Balaguera CG, Restrepo BN, et al. (2022) Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia. PLoS Negl Trop Dis 16(8): e0010334. https://doi.org/10.1371/journal.pntd.0010334
url https://doi.org/10.1371/journal.pntd.0010334
https://hdl.handle.net/20.500.12494/46669
identifier_str_mv Freitas LP, Carabali M, Yuan M, Jaramillo- Ramirez GI, Balaguera CG, Restrepo BN, et al. (2022) Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia. PLoS Negl Trop Dis 16(8): e0010334. https://doi.org/10.1371/journal.pntd.0010334
dc.relation.ispartofjournal.spa.fl_str_mv Plos Neglected Tropical Diseases
dc.rights.license.none.fl_str_mv Atribución
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dc.format.extent.spa.fl_str_mv 1-18
dc.coverage.temporal.spa.fl_str_mv 16 (8)
dc.publisher.spa.fl_str_mv Faculty of Medicine, Universidad Cooperativa de Colombia, Villavicencio, Colombia,
dc.publisher.program.spa.fl_str_mv Medicina
dc.publisher.place.spa.fl_str_mv Villavicencio
institution Universidad Cooperativa de Colombia
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spelling Picinini, LaisCarabali, MabelYuan, MengruJaramillo Ramírez, Gloria IsabelGarcía Balaguera, CésarRestrepo, BertaZinser, Kate16 (8)2022-10-10T16:45:47Z2022-10-10T16:45:47Z2022-08-23https://doi.org/10.1371/journal.pntd.0010334https://hdl.handle.net/20.500.12494/46669Freitas LP, Carabali M, Yuan M, Jaramillo- Ramirez GI, Balaguera CG, Restrepo BN, et al. (2022) Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia. PLoS Negl Trop Dis 16(8): e0010334. https://doi.org/10.1371/journal.pntd.0010334Background Colombia has one of the highest burdens of arboviruses in South America. The country was in a state of hyperendemicity between 2014 and 2016, with co-circulation of several Aedes- borne viruses, including a syndemic of dengue, chikungunya, and Zika in 2015. Methodology/Principal findings We analyzed the cases of dengue, chikungunya, and Zika notified in Colombia from January 2014 to December 2018 by municipality and week. The trajectory and velocity of spread was studied using trend surface analysis, and spatio-temporal high-risk clusters for each disease in separate and for the three diseases simultaneously (multivariate) were identified using Kulldorff’s scan statistics. During the study period, there were 366,628, 77,345 and 74,793 cases of dengue, chikungunya, and Zika, respectively, in Colombia. The spread pat- terns for chikungunya and Zika were similar, although Zika’s spread was accelerated. Both chikungunya and Zika mainly spread from the regions on the Atlantic coast and the south- west to the rest of the country. We identified 21, 16, and 13 spatio-temporal clusters of den- gue, chikungunya and Zika, respectively, and, from the multivariate analysis, 20 spatio-tem- poral clusters, among which 7 were simultaneous for the three diseases. For all disease- specific analyses and the multivariate analysis, the most-likely cluster was identified in the south-western region of Colombia, including the Valle del Cauca department. Conclusions/Significance The results further our understanding of emerging Aedes-borne diseases in Colombia by providing useful evidence on their potential site of entry and spread trajectory within the country, and identifying spatio-temporal disease-specific and multivariate high-risk clusters of dengue, chikungunya, and Zika, information that can be used to target interventions.https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000149799https://orcid.org/0000-0002-7597-3873gloria.jaramillor@campusucc.edu.co1-18Faculty of Medicine, Universidad Cooperativa de Colombia, Villavicencio, Colombia,MedicinaVillavicencioArbovirus; salud pública, cluster temporal; distribuciónSpatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in ColombiaArtículos Científicoshttp://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/publishedVersionAtribucióninfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Plos Neglected Tropical DiseasesPublicationORIGINALCLUSTER DENGUE 2022.pdfCLUSTER DENGUE 2022.pdfapplication/pdf3322280https://repository.ucc.edu.co/bitstreams/28371506-5e4c-411c-bd47-aca6d4ac700a/download8f039bf65b0bf27f28dcf99afa03c2beMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repository.ucc.edu.co/bitstreams/3ed17179-0830-4c0e-930a-c09a613cf8c3/download8a4605be74aa9ea9d79846c1fba20a33MD52THUMBNAILCLUSTER DENGUE 2022.pdf.jpgCLUSTER DENGUE 2022.pdf.jpgGenerated Thumbnailimage/jpeg5936https://repository.ucc.edu.co/bitstreams/e6ba75c4-35e7-4c21-a084-81a12d4e770c/downloadc7fe20106a8dd1280cd20589128b5ac3MD53TEXTCLUSTER DENGUE 2022.pdf.txtCLUSTER DENGUE 2022.pdf.txtExtracted texttext/plain72838https://repository.ucc.edu.co/bitstreams/1b778292-d851-47b6-8949-cfda6967bb2b/download8c792754de05a3d3ee2c393f226ec376MD5420.500.12494/46669oai:repository.ucc.edu.co:20.500.12494/466692024-08-20 16:24:07.989open.accesshttps://repository.ucc.edu.coRepositorio Institucional Universidad Cooperativa de Colombiabdigital@metabiblioteca.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