A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.

Infection of cells by enveloped viruses is a multi-step process requiring both the binding of viral glycoproteins to specific cellular receptors/coreceptors and less specific interactions with accessory molecules whose main function is to locate the virus closer to its receptor(s) [1]. Among such at...

Full description

Autores:
Biasin, Mara
Sironi, Manuela
Saulle, Irma
Pontremoli, Chiara
Garziano, Micaela
Cagliani, Rachele
Trabattoni, Daria
Caputo, Sergio Lo
Vichi, Francesca
Mazzotta, Francesco
Forni, Diego
Riva, Stefania
Aguilar Jiménez, Wbeimar
Cedeño, Samandhy
Sanchez, Jorge
Brander, Christian
Zapata Builes, Wildeman
Rugeles López, María Teresa
Clerici, Mario
Tipo de recurso:
Article of journal
Fecha de publicación:
2016
Institución:
Universidad Cooperativa de Colombia
Repositorio:
Repositorio UCC
Idioma:
OAI Identifier:
oai:repository.ucc.edu.co:20.500.12494/5667
Acceso en línea:
https://hdl.handle.net/20.500.12494/5667
Palabra clave:
HIV
Resistance to infection
Polymorphism
TIM-1
HESN
Rights
openAccess
License
http://purl.org/coar/access_right/c_abf2
id COOPER2_c540aebba6a997f4c3591cc14bddc285
oai_identifier_str oai:repository.ucc.edu.co:20.500.12494/5667
network_acronym_str COOPER2
network_name_str Repositorio UCC
repository_id_str
dc.title.spa.fl_str_mv A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
title A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
spellingShingle A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
HIV
Resistance to infection
Polymorphism
TIM-1
HESN
title_short A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
title_full A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
title_fullStr A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
title_full_unstemmed A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
title_sort A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.
dc.creator.fl_str_mv Biasin, Mara
Sironi, Manuela
Saulle, Irma
Pontremoli, Chiara
Garziano, Micaela
Cagliani, Rachele
Trabattoni, Daria
Caputo, Sergio Lo
Vichi, Francesca
Mazzotta, Francesco
Forni, Diego
Riva, Stefania
Aguilar Jiménez, Wbeimar
Cedeño, Samandhy
Sanchez, Jorge
Brander, Christian
Zapata Builes, Wildeman
Rugeles López, María Teresa
Clerici, Mario
dc.contributor.author.none.fl_str_mv Biasin, Mara
Sironi, Manuela
Saulle, Irma
Pontremoli, Chiara
Garziano, Micaela
Cagliani, Rachele
Trabattoni, Daria
Caputo, Sergio Lo
Vichi, Francesca
Mazzotta, Francesco
Forni, Diego
Riva, Stefania
Aguilar Jiménez, Wbeimar
Cedeño, Samandhy
Sanchez, Jorge
Brander, Christian
Zapata Builes, Wildeman
Rugeles López, María Teresa
Clerici, Mario
dc.subject.spa.fl_str_mv HIV
Resistance to infection
Polymorphism
TIM-1
HESN
topic HIV
Resistance to infection
Polymorphism
TIM-1
HESN
description Infection of cells by enveloped viruses is a multi-step process requiring both the binding of viral glycoproteins to specific cellular receptors/coreceptors and less specific interactions with accessory molecules whose main function is to locate the virus closer to its receptor(s) [1]. Among such attachment factors, a key role has been attributed to the TIM (T-cell immunoglobulin and mucin domain containing) family receptors, cell surface glycoproteins that control both innate and acquired immune responses during allergy, asthma, tolerance, autoimmunity, as well as viral infections [2]. In the human genome, three genes (HAVCR1, HAVCR2 and TIMD4) encode TIM proteins (TIM-1, TIM-3, and TIM-4, respectively). Structurally, all TIM proteins have a conserved ectodomain consisting of an immunoglobulin (IgV)-like domain and an heavily glycosylated mucin-like domain, anchored to the cell through a transmembrane domain followed by a cytoplasmic tail [3]. TIM-1, in particular, is mostly expressed by hepatocytes and lymphoid cells, preferentially Th2 cells, and is a key T-cell costimulatory molecule that controls T cell activation [4,5]. Human TIM-1, originally identified as the receptor for hepatitis A virus (HAV) [6], promotes the entry of a wide variety of enveloped viruses in host cells [7]. Virus internalization occurs when TIM binds phosphatidylserine (PtdSer) on the viral envelope; this process seems to be independent of viral glycoprotein interaction with cellular receptors [7,8]. A recent analysis of the role of TIM-1 domains indicated that, whereas the IgV domain is essential for virus binding and internalization, the mucin-like domain also plays a key role in enhancing viral entry [8]. Specifically, the use of deletion mutants indicated that a stalk of adequate length is necessary to form an extended structure that places the IgV domain within the appropriate distance from the host cell membrane, thus allowing optimal interactions with the virus [8]. Interestingly, the HAVCR1 gene is highly polymorphic in human populations. In particular, natural selection has maintained high nucleotide diversity in exon 4, which encodes a portion of the mucin-like domain [9]. The selective pressure acting on this region is believed to be virus-mediated, suggesting that polymorphisms in exon 4 modulate viral infection susceptibility and/or diseases severity. In fact, an 18-bp insertion/deletion polymorphism in the exon, causing a six amino acid insertion/deletion variant (157ins/delMTTTVP), was associated with the risk to develop acute liver failure following HAV infection [10]; the same variant was found to modulate AIDS progression in HIV-1 infected subjects [11]. Notably, in both studies the deleted (short) allele of 157ins/delMTTTVP exerted a protective effect. In the HAV study, having one or two copies of the long form of TIM1 was associated with a greater risk to develop severe liver failure, indicating that the protective effect of the short allele is recessive [10]. These data are in line with the observation that the length of the mucin-like domain is critical for enhancing enveloped virus entry [8]. In fact, TIM-1 molecules with a short mucin-like domain (157delMTTTVP) bind HAV less efficiently than those with a long domain (157insMTTTVP) [10]. Herein we assessed whether the HAVCR1 (Hepatitis A virus cellular receptor 1) 18-bp insertion/deletion polymorphism modulates susceptibility to HIV-1 infection in three independent cohorts of HIV-1 exposed seronegative (HESN) individuals. Results indicated that homozygosity for the short allele is associated with natural protection from infection and lower rate of HIV-1 replication in CD4þ T lymphocytes
publishDate 2016
dc.date.issued.none.fl_str_mv 2016-09-18
dc.date.accessioned.none.fl_str_mv 2018-09-05T17:54:44Z
dc.date.available.none.fl_str_mv 2018-09-05T17:54:44Z
dc.type.none.fl_str_mv Artículo
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.coar.none.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.coarversion.none.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_6501
status_str publishedVersion
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12494/5667
dc.identifier.bibliographicCitation.spa.fl_str_mv Biasin, M., Sironi, M., Saulle, I. y otros. (2016). A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection. Microbes and Infection, 19, 69-74. https://doi.org/10.1016/j.micinf.2016.09.005
url https://hdl.handle.net/20.500.12494/5667
identifier_str_mv Biasin, M., Sironi, M., Saulle, I. y otros. (2016). A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection. Microbes and Infection, 19, 69-74. https://doi.org/10.1016/j.micinf.2016.09.005
dc.relation.isversionof.spa.fl_str_mv https://doi.org/10.1016/j.micinf.2016.09.005
dc.rights.accessrights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.none.fl_str_mv http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
rights_invalid_str_mv http://purl.org/coar/access_right/c_abf2
dc.publisher.spa.fl_str_mv Universidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Medellín y Envigado
dc.publisher.program.spa.fl_str_mv Medicina
dc.publisher.place.spa.fl_str_mv Medellín
institution Universidad Cooperativa de Colombia
bitstream.url.fl_str_mv https://repository.ucc.edu.co/bitstreams/d36372ac-cd1f-42f7-adf5-1593847f83e8/download
https://repository.ucc.edu.co/bitstreams/1417f1f5-c128-435b-b351-1e526ba205a1/download
https://repository.ucc.edu.co/bitstreams/3d39aeb1-9f1c-400e-a20f-00358add038c/download
https://repository.ucc.edu.co/bitstreams/d2bc297d-16c8-4a88-9094-03b2e9a54c63/download
https://repository.ucc.edu.co/bitstreams/6e3b2c3d-6c55-404b-bf1f-7879ded597a1/download
https://repository.ucc.edu.co/bitstreams/196631e9-fd16-47d0-b3bf-0fe77d96a120/download
https://repository.ucc.edu.co/bitstreams/62a0b994-593d-4abf-851e-3ded38e4e83e/download
bitstream.checksum.fl_str_mv 2abf5d89f33aac0390596e3b57b56f95
2e57c5b907512a2366693866ad6ac2ed
b24d6246501602ff2bc75367877f4278
6f853c254f96dddbb64f489d531519f2
0c2ecb0214a7ab5cedccf07da7cbf46c
6f41e7b682861f809c2d3c9009cc849f
41f4588d0aba29e93cfb193790cfd232
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional Universidad Cooperativa de Colombia
repository.mail.fl_str_mv bdigital@metabiblioteca.com
_version_ 1814247245550190592
spelling Biasin, MaraSironi, ManuelaSaulle, IrmaPontremoli, ChiaraGarziano, MicaelaCagliani, RacheleTrabattoni, DariaCaputo, Sergio LoVichi, FrancescaMazzotta, FrancescoForni, DiegoRiva, StefaniaAguilar Jiménez, WbeimarCedeño, SamandhySanchez, JorgeBrander, ChristianZapata Builes, WildemanRugeles López, María TeresaClerici, Mario2018-09-05T17:54:44Z2018-09-05T17:54:44Z2016-09-18https://hdl.handle.net/20.500.12494/5667Biasin, M., Sironi, M., Saulle, I. y otros. (2016). A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection. Microbes and Infection, 19, 69-74. https://doi.org/10.1016/j.micinf.2016.09.005Infection of cells by enveloped viruses is a multi-step process requiring both the binding of viral glycoproteins to specific cellular receptors/coreceptors and less specific interactions with accessory molecules whose main function is to locate the virus closer to its receptor(s) [1]. Among such attachment factors, a key role has been attributed to the TIM (T-cell immunoglobulin and mucin domain containing) family receptors, cell surface glycoproteins that control both innate and acquired immune responses during allergy, asthma, tolerance, autoimmunity, as well as viral infections [2]. In the human genome, three genes (HAVCR1, HAVCR2 and TIMD4) encode TIM proteins (TIM-1, TIM-3, and TIM-4, respectively). Structurally, all TIM proteins have a conserved ectodomain consisting of an immunoglobulin (IgV)-like domain and an heavily glycosylated mucin-like domain, anchored to the cell through a transmembrane domain followed by a cytoplasmic tail [3]. TIM-1, in particular, is mostly expressed by hepatocytes and lymphoid cells, preferentially Th2 cells, and is a key T-cell costimulatory molecule that controls T cell activation [4,5]. Human TIM-1, originally identified as the receptor for hepatitis A virus (HAV) [6], promotes the entry of a wide variety of enveloped viruses in host cells [7]. Virus internalization occurs when TIM binds phosphatidylserine (PtdSer) on the viral envelope; this process seems to be independent of viral glycoprotein interaction with cellular receptors [7,8]. A recent analysis of the role of TIM-1 domains indicated that, whereas the IgV domain is essential for virus binding and internalization, the mucin-like domain also plays a key role in enhancing viral entry [8]. Specifically, the use of deletion mutants indicated that a stalk of adequate length is necessary to form an extended structure that places the IgV domain within the appropriate distance from the host cell membrane, thus allowing optimal interactions with the virus [8]. Interestingly, the HAVCR1 gene is highly polymorphic in human populations. In particular, natural selection has maintained high nucleotide diversity in exon 4, which encodes a portion of the mucin-like domain [9]. The selective pressure acting on this region is believed to be virus-mediated, suggesting that polymorphisms in exon 4 modulate viral infection susceptibility and/or diseases severity. In fact, an 18-bp insertion/deletion polymorphism in the exon, causing a six amino acid insertion/deletion variant (157ins/delMTTTVP), was associated with the risk to develop acute liver failure following HAV infection [10]; the same variant was found to modulate AIDS progression in HIV-1 infected subjects [11]. Notably, in both studies the deleted (short) allele of 157ins/delMTTTVP exerted a protective effect. In the HAV study, having one or two copies of the long form of TIM1 was associated with a greater risk to develop severe liver failure, indicating that the protective effect of the short allele is recessive [10]. These data are in line with the observation that the length of the mucin-like domain is critical for enhancing enveloped virus entry [8]. In fact, TIM-1 molecules with a short mucin-like domain (157delMTTTVP) bind HAV less efficiently than those with a long domain (157insMTTTVP) [10]. Herein we assessed whether the HAVCR1 (Hepatitis A virus cellular receptor 1) 18-bp insertion/deletion polymorphism modulates susceptibility to HIV-1 infection in three independent cohorts of HIV-1 exposed seronegative (HESN) individuals. Results indicated that homozygosity for the short allele is associated with natural protection from infection and lower rate of HIV-1 replication in CD4þ T lymphocytesWe investigated whether a 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 (T-cell immunoglobulin and mucin domain 1), modulates susceptibility to HIV-1 infection. The polymorphism was genotyped in three case/control cohorts of HIV-1 exposed seronegative individuals (HESN) and HIV-1 infected subjects from Italy, Peru, and Colombia; data from a Thai population were retrieved from the literature. Across all cohorts, homozygosity for the short TIM-1 allele was more common in HESNs than in HIV-1 infected subjects. A metaanalysis of the four association analyses yielded a p value of 0.005. In vitro infection assays of CD4þ T lymphocytes indicated that homozygosity for the short allele is associated with lower rate of HIV-1 replication. These results suggest that the deletion allele protects from HIV-1 infection with a recessive effect.wildeman.zapatab@campusucc.edu.coUniversidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Medellín y EnvigadoMedicinaMedellínhttps://doi.org/10.1016/j.micinf.2016.09.005HIVResistance to infectionPolymorphismTIM-1HESNA 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection.Artículohttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2PublicationTEXTA 6 amino acid insertion deletion UdeA UCC 2017.pdf.txtA 6 amino acid insertion deletion UdeA UCC 2017.pdf.txtExtracted texttext/plain27215https://repository.ucc.edu.co/bitstreams/d36372ac-cd1f-42f7-adf5-1593847f83e8/download2abf5d89f33aac0390596e3b57b56f95MD54Licencia de uso_articulo Biomedica.pdf.txtLicencia de uso_articulo Biomedica.pdf.txtExtracted texttext/plain5622https://repository.ucc.edu.co/bitstreams/1417f1f5-c128-435b-b351-1e526ba205a1/download2e57c5b907512a2366693866ad6ac2edMD56THUMBNAILA 6 amino acid insertion deletion UdeA UCC 2017.pdf.jpgA 6 amino acid insertion deletion UdeA UCC 2017.pdf.jpgIM Thumbnailimage/jpeg5728https://repository.ucc.edu.co/bitstreams/3d39aeb1-9f1c-400e-a20f-00358add038c/downloadb24d6246501602ff2bc75367877f4278MD55Licencia de uso_articulo Biomedica.pdf.jpgLicencia de uso_articulo Biomedica.pdf.jpgIM Thumbnailimage/jpeg5293https://repository.ucc.edu.co/bitstreams/d2bc297d-16c8-4a88-9094-03b2e9a54c63/download6f853c254f96dddbb64f489d531519f2MD57LICENSElicense.txtlicense.txttext/plain; charset=utf-84370https://repository.ucc.edu.co/bitstreams/6e3b2c3d-6c55-404b-bf1f-7879ded597a1/download0c2ecb0214a7ab5cedccf07da7cbf46cMD53ORIGINALA 6 amino acid insertion deletion UdeA UCC 2017.pdfA 6 amino acid insertion deletion UdeA UCC 2017.pdfapplication/pdf283436https://repository.ucc.edu.co/bitstreams/196631e9-fd16-47d0-b3bf-0fe77d96a120/download6f41e7b682861f809c2d3c9009cc849fMD51Licencia de uso_articulo Biomedica.pdfLicencia de uso_articulo Biomedica.pdfapplication/pdf396756https://repository.ucc.edu.co/bitstreams/62a0b994-593d-4abf-851e-3ded38e4e83e/download41f4588d0aba29e93cfb193790cfd232MD5220.500.12494/5667oai:repository.ucc.edu.co:20.500.12494/56672024-08-10 22:44:26.106open.accesshttps://repository.ucc.edu.coRepositorio Institucional Universidad Cooperativa de Colombiabdigital@metabiblioteca.com