Genotyping of dengue virus from infected tissue samples embedded in paraffin
Dengue has become one of the vector-borne diseases that affect humans worldwide. In Latin American countries, Colombia is historically one of the most affected by epidemics of this flavivirus. The underreporting of signs and symptoms of probable cases of dengue, the lack of characterization of the s...
- Autores:
-
Rivera, Jorge Alonso
Rengifo, Aura Caterine
Rosales Munar, Alicia
Díaz Herrera, Taylor H.
Usme Ciro, José Aldemar
Parra, Edgar
Álvarez Díaz, Diego Alejandro
Laiton Donato, Katherine
Caldas, Maria Leonor
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2023
- Institución:
- Universidad Cooperativa de Colombia
- Repositorio:
- Repositorio UCC
- Idioma:
- eng
- OAI Identifier:
- oai:repository.ucc.edu.co:20.500.12494/55527
- Acceso en línea:
- https://hdl.handle.net/20.500.12494/55527
- Palabra clave:
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-nd/4.0/
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Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| title |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| spellingShingle |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| title_short |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| title_full |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| title_fullStr |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
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Genotyping of dengue virus from infected tissue samples embedded in paraffin |
| title_sort |
Genotyping of dengue virus from infected tissue samples embedded in paraffin |
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Rivera, Jorge Alonso Rengifo, Aura Caterine Rosales Munar, Alicia Díaz Herrera, Taylor H. Usme Ciro, José Aldemar Parra, Edgar Álvarez Díaz, Diego Alejandro Laiton Donato, Katherine Caldas, Maria Leonor |
| dc.contributor.author.none.fl_str_mv |
Rivera, Jorge Alonso Rengifo, Aura Caterine Rosales Munar, Alicia Díaz Herrera, Taylor H. Usme Ciro, José Aldemar Parra, Edgar Álvarez Díaz, Diego Alejandro Laiton Donato, Katherine Caldas, Maria Leonor |
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CIST-Centro de Investigación en Salud para el Trópico |
| description |
Dengue has become one of the vector-borne diseases that affect humans worldwide. In Latin American countries, Colombia is historically one of the most affected by epidemics of this flavivirus. The underreporting of signs and symptoms of probable cases of dengue, the lack of characterization of the serotypes of the infection, and the few detailed studies of postmortem necropsies of patients are among other conditions that have delayed progress in the knowledge of the pathogenesis of the disease. This study presents the results of fragment sequencing assays on paraffin-embedded tissue samples from fatal DENV cases during the 2010 epidemic in Colombia. We found that the predominant serotype was DENV-2, with the Asian/American genotype of lineages 1 and 2. This work is one of the few reports of the circulating genotypes of dengue during the 2010 epidemic in Colombia, one of the most lethal dates in the country's history. |
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2023 |
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2023-05-25 |
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2024-05-06T21:09:22Z |
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2024-05-06T21:09:22Z |
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Rivera JA, Rengifo A.C., Rosales Munar, A., Díaz Herrera T.H., Usme Ciro, J.A., Parra, E., Alvarez Díaz. D.A., Laiton Donato, K. and Caldas, M.L. 2023. Genotyping of dengue virus from infected tissue samples embedded in paraffin. Virology Journal 20:100. doi: 10.1186/s12985-023-02072-5 |
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1743-422X |
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https://hdl.handle.net/20.500.12494/55527 |
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1743-422X |
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Rivera JA, Rengifo A.C., Rosales Munar, A., Díaz Herrera T.H., Usme Ciro, J.A., Parra, E., Alvarez Díaz. D.A., Laiton Donato, K. and Caldas, M.L. 2023. Genotyping of dengue virus from infected tissue samples embedded in paraffin. Virology Journal 20:100. doi: 10.1186/s12985-023-02072-5 1743-422X doi.org/10.1186/s12985-023-02072-5 |
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eng |
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eng |
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100 |
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20 |
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Virology Journal |
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Sylvestre E, Joachim C, Cecilia-Joseph E, Bouzille G, Campillo-Gimenez B, Cuggia M, et al. Data-driven methods for dengue prediction and surveillance using real-world and Big Data: a systematic review. PLoS Negl Trop Dis. 2022;16(1):e0010056. Messina JP, Brady OJ, Golding N, Kraemer MUG, Wint GRW, Ray SE, et al. The current and future global distribution and population at risk of dengue. Nat Microbiol. 2019;4(9):1508–15. Katzelnick LC, Coloma J, Harris E. Dengue: knowledge gaps, unmet needs, and research priorities. Lancet Infect Dis. 2017;17(3):e88–100. World Health Organization. Dengue: guidelines for diagnosis, treatment, prevention and control. Geneva, France: World Health Organization, 2009, p. 10-12. Annan E, Bukhari MH, Treviño J, Abad ZSH, Lubinda J, da Silva EAB, et al. The ecological determinants of severe dengue: a Bayesian inferential model. Ecol. Inform. 2023;74:101986. https://doi.org/10.1016/j.ecoinf.2023.101986. Barnes WJ, Rosen L. Fatal hemorrhagic disease and shock associated with primary dengue infection on a Pacific island. Am J Trop Med Hyg. 1974;23(3):495–506. Cuypers L, Libin PJK, Simmonds P, Nowe A, Munoz-Jordan J, Alcantara LCJ, et al. Time to harmonize dengue nomenclature and classification. Viruses. 2018;10(10):569. https://doi.org/10.3390/v10100569. Rico-Hesse R. Microevolution and virulence of dengue viruses. Adv Virus Res. 2003;59:315–41. Twiddy SS, Farrar JJ, Vinh Chau N, Wills B, Gould EA, Gritsun T, et al. Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. Virology. 2002;298(1):63–72. Holmes E, Twiddy S. The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol. 2003;3(1):19–28. |
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Universidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Santa Marta |
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Externo |
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Universidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Santa Marta |
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Rivera, Jorge AlonsoRengifo, Aura CaterineRosales Munar, AliciaDíaz Herrera, Taylor H.Usme Ciro, José AldemarParra, EdgarÁlvarez Díaz, Diego AlejandroLaiton Donato, KatherineCaldas, Maria LeonorCIST-Centro de Investigación en Salud para el Trópico2024-05-06T21:09:22Z2024-05-06T21:09:22Z2023-05-25Rivera JA, Rengifo A.C., Rosales Munar, A., Díaz Herrera T.H., Usme Ciro, J.A., Parra, E., Alvarez Díaz. D.A., Laiton Donato, K. and Caldas, M.L. 2023. Genotyping of dengue virus from infected tissue samples embedded in paraffin. Virology Journal 20:100. doi: 10.1186/s12985-023-02072-51743-422Xhttps://hdl.handle.net/20.500.12494/55527doi.org/10.1186/s12985-023-02072-51743-422XDengue has become one of the vector-borne diseases that affect humans worldwide. In Latin American countries, Colombia is historically one of the most affected by epidemics of this flavivirus. The underreporting of signs and symptoms of probable cases of dengue, the lack of characterization of the serotypes of the infection, and the few detailed studies of postmortem necropsies of patients are among other conditions that have delayed progress in the knowledge of the pathogenesis of the disease. This study presents the results of fragment sequencing assays on paraffin-embedded tissue samples from fatal DENV cases during the 2010 epidemic in Colombia. We found that the predominant serotype was DENV-2, with the Asian/American genotype of lineages 1 and 2. This work is one of the few reports of the circulating genotypes of dengue during the 2010 epidemic in Colombia, one of the most lethal dates in the country's history.Instituto Nacional de Salud10 páginasapplication/pdfengUniversidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Santa MartaExternohttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://purl.org/coar/access_right/c_abf2https://virologyj.biomedcentral.com/articles/10.1186/s12985-023-02072-5Genotyping of dengue virus from infected tissue samples embedded in paraffinArtículohttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion10010120Virology JournalSylvestre E, Joachim C, Cecilia-Joseph E, Bouzille G, Campillo-Gimenez B, Cuggia M, et al. Data-driven methods for dengue prediction and surveillance using real-world and Big Data: a systematic review. PLoS Negl Trop Dis. 2022;16(1):e0010056.Messina JP, Brady OJ, Golding N, Kraemer MUG, Wint GRW, Ray SE, et al. The current and future global distribution and population at risk of dengue. Nat Microbiol. 2019;4(9):1508–15.Katzelnick LC, Coloma J, Harris E. Dengue: knowledge gaps, unmet needs, and research priorities. Lancet Infect Dis. 2017;17(3):e88–100.World Health Organization. Dengue: guidelines for diagnosis, treatment, prevention and control. Geneva, France: World Health Organization, 2009, p. 10-12.Annan E, Bukhari MH, Treviño J, Abad ZSH, Lubinda J, da Silva EAB, et al. The ecological determinants of severe dengue: a Bayesian inferential model. Ecol. Inform. 2023;74:101986. https://doi.org/10.1016/j.ecoinf.2023.101986.Barnes WJ, Rosen L. Fatal hemorrhagic disease and shock associated with primary dengue infection on a Pacific island. Am J Trop Med Hyg. 1974;23(3):495–506.Cuypers L, Libin PJK, Simmonds P, Nowe A, Munoz-Jordan J, Alcantara LCJ, et al. Time to harmonize dengue nomenclature and classification. Viruses. 2018;10(10):569. https://doi.org/10.3390/v10100569.Rico-Hesse R. Microevolution and virulence of dengue viruses. Adv Virus Res. 2003;59:315–41.Twiddy SS, Farrar JJ, Vinh Chau N, Wills B, Gould EA, Gritsun T, et al. Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. Virology. 2002;298(1):63–72.Holmes E, Twiddy S. The origin, emergence and evolutionary genetics of dengue virus. 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