Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia
Canine distemper virus (CDV) is considered a reemerging disease-causing agent in domestic dogs because it presents high divergence among circulating strains worldwide. In Colombia, the South America-3 and South America/North America-4 lineages co-circulate in domestic dogs, both in the Medellin metr...
- Autores:
-
Duque Valencia, July
Diaz, Francisco Javier
Ruiz Sáenz, Julián
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2020
- Institución:
- Universidad Cooperativa de Colombia
- Repositorio:
- Repositorio UCC
- Idioma:
- OAI Identifier:
- oai:repository.ucc.edu.co:20.500.12494/32937
- Acceso en línea:
- https://hdl.handle.net/20.500.12494/32937
- Palabra clave:
- Phylogenomics
Reemerging
Lineages co-circulation
Genome
CDV
- Rights
- openAccess
- License
- Atribución – No comercial – Compartir igual
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Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| title |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| spellingShingle |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia Phylogenomics Reemerging Lineages co-circulation Genome CDV |
| title_short |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| title_full |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| title_fullStr |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| title_full_unstemmed |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| title_sort |
Phylogenomic analysis of two co-circulating canine distemper virus lineages in Colombia |
| dc.creator.fl_str_mv |
Duque Valencia, July Diaz, Francisco Javier Ruiz Sáenz, Julián |
| dc.contributor.author.none.fl_str_mv |
Duque Valencia, July Diaz, Francisco Javier Ruiz Sáenz, Julián |
| dc.subject.spa.fl_str_mv |
Phylogenomics Reemerging Lineages co-circulation Genome CDV |
| topic |
Phylogenomics Reemerging Lineages co-circulation Genome CDV |
| description |
Canine distemper virus (CDV) is considered a reemerging disease-causing agent in domestic dogs because it presents high divergence among circulating strains worldwide. In Colombia, the South America-3 and South America/North America-4 lineages co-circulate in domestic dogs, both in the Medellin metropolitan area. In this paper, two full CDV genomes from each viral lineage circulating in Medellin were sequenced; we explored the phylogenetic relationship with the available genome sequences; we described the presence of CDV mutations in the South America-3 and South America/North America-4 lineages associated with adaptation to human cells and a crossing of the species barrier and pathogenicity; and we established the evolutionary rates and time of the closest common ancestor for each gene and characterized the presentation of multiple genomic sites by positive selection |
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2020 |
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2020-01-01 |
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2021-01-28T17:14:44Z |
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2021-01-28T17:14:44Z |
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Artículos Científicos |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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2076-0817 |
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doi.org/10.3390/pathogens9010026 |
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https://hdl.handle.net/20.500.12494/32937 |
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Duque-Valencia J, Diaz FJ, Ruiz-Saenz J. Phylogenomic Analysis of Two Co-Circulating Canine Distemper Virus Lineages in Colombia. Pathogens. 2020; 9(1):26. https://doi.org/10.3390/pathogens9010026 |
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2076-0817 doi.org/10.3390/pathogens9010026 Duque-Valencia J, Diaz FJ, Ruiz-Saenz J. Phylogenomic Analysis of Two Co-Circulating Canine Distemper Virus Lineages in Colombia. Pathogens. 2020; 9(1):26. https://doi.org/10.3390/pathogens9010026 |
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https://hdl.handle.net/20.500.12494/32937 |
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https://www.mdpi.com/2076-0817/9/1/26 |
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Pathogens |
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MacLachlan, N.; Dubovi, E.; Fenner, F. Fenner’s Veterinary Virology, 4th ed.; Academic Press: Boston, MA, USA, 2011; pp. 299–325. Martinez-Gutierrez, M.; Ruiz-Saenz, J. Diversity of susceptible hosts in canine distemper virus infection: A systematic review and data synthesis. BMC Vet. Res. 2016, 12, 78 International Committee on Taxonomy of Viruses. International Committee on Taxonomy of Viruses (ICTV). 2019. Available online: https://talk.ictvonline.org/taxonomy/ (accessed on 10 December 2019). Lunardi, M.; Darold, G.M.; Amude, A.M.; Headley, S.A.; Sonne, L.; Yamauchi, K.C.I.; Boabaid, F.M.; Alfieri, A.F.; Alfieri, A.A. Canine distemper virus active infection in order pilosa, family myrmecophagidae, species tamandua tetradactyla. Vet. Microbiol. 2018, 220, 7–11 Chinnakannan, S.K.; Nanda, S.K.; Baron, M.D. Morbillivirus v proteins exhibit multiple mechanisms to block type 1 and type 2 interferon signalling pathways. PLoS ONE 2013, 8, e57063 Schuhmann, K.M.; Pfaller, C.K.; Conzelmann, K.K. The measles virus v protein binds to p65 (rela) to suppress nf-kappab activity. J. Virol. 2011, 85, 3162–3171 Duque-Valencia, J.; Sarute, N.; Olarte-Castillo, X.A.; Ruiz-Saenz, J. Evolution and interspecies transmission of canine distemper virus-an outlook of the diverse evolutionary landscapes of a multi-host virus. Viruses 2019, 11, 582. Martella, V.; Bianchi, A.; Bertoletti, I.; Pedrotti, L.; Gugiatti, A.; Catella, A.; Cordioli, P.; Lucente, M.S.; Elia, G.; Buonavoglia, C. Canine distemper epizootic among red foxes, Italy, 2009. Emerg. Infect. Dis. 2010, 16, 2007. Espinal, M.A.; Diaz, F.J.; Ruiz-Saenz, J. Phylogenetic evidence of a new canine distemper virus lineage among domestic dogs in Colombia, South America. Vet. Microbiol. 2014, 172, 168–176. Pope, J.P.; Miller, D.L.; Riley, M.C.; Anis, E.; Wilkes, R.P. Characterization of a novel canine distemper virus causing disease in wildlife. J. Vet. Diagn. Investig. 2016, 28, 506–513 |
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MDPI Universidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina Veterinaría y Zootecnia, Bucaramanga |
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Medicina veterinaria y zootecnia |
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Duque Valencia, JulyDiaz, Francisco JavierRuiz Sáenz, Julián9 (1)2021-01-28T17:14:44Z2021-01-28T17:14:44Z2020-01-012076-0817doi.org/10.3390/pathogens9010026https://hdl.handle.net/20.500.12494/32937Duque-Valencia J, Diaz FJ, Ruiz-Saenz J. Phylogenomic Analysis of Two Co-Circulating Canine Distemper Virus Lineages in Colombia. Pathogens. 2020; 9(1):26. https://doi.org/10.3390/pathogens9010026Canine distemper virus (CDV) is considered a reemerging disease-causing agent in domestic dogs because it presents high divergence among circulating strains worldwide. In Colombia, the South America-3 and South America/North America-4 lineages co-circulate in domestic dogs, both in the Medellin metropolitan area. In this paper, two full CDV genomes from each viral lineage circulating in Medellin were sequenced; we explored the phylogenetic relationship with the available genome sequences; we described the presence of CDV mutations in the South America-3 and South America/North America-4 lineages associated with adaptation to human cells and a crossing of the species barrier and pathogenicity; and we established the evolutionary rates and time of the closest common ancestor for each gene and characterized the presentation of multiple genomic sites by positive selectionhttp://scienti.colciencias.gov.co:8081/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000153095https://orcid.org/0000-0002-1447-1458https://scienti.minciencias.gov.co/gruplac/jsp/visualiza/visualizagr.jsp?nro=00000000000695julian.ruizs@campusucc.edu.cohttps://scholar.google.com/citations?user=o3Y7mZwAAAAJ&hl=es26MDPIUniversidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina Veterinaría y Zootecnia, BucaramangaMedicina veterinaria y zootecniaBucaramangahttps://www.mdpi.com/2076-0817/9/1/26PathogensMacLachlan, N.; Dubovi, E.; Fenner, F. Fenner’s Veterinary Virology, 4th ed.; Academic Press: Boston, MA, USA, 2011; pp. 299–325.Martinez-Gutierrez, M.; Ruiz-Saenz, J. Diversity of susceptible hosts in canine distemper virus infection: A systematic review and data synthesis. BMC Vet. Res. 2016, 12, 78International Committee on Taxonomy of Viruses. International Committee on Taxonomy of Viruses (ICTV). 2019. Available online: https://talk.ictvonline.org/taxonomy/ (accessed on 10 December 2019).Lunardi, M.; Darold, G.M.; Amude, A.M.; Headley, S.A.; Sonne, L.; Yamauchi, K.C.I.; Boabaid, F.M.; Alfieri, A.F.; Alfieri, A.A. Canine distemper virus active infection in order pilosa, family myrmecophagidae, species tamandua tetradactyla. Vet. Microbiol. 2018, 220, 7–11Chinnakannan, S.K.; Nanda, S.K.; Baron, M.D. Morbillivirus v proteins exhibit multiple mechanisms to block type 1 and type 2 interferon signalling pathways. PLoS ONE 2013, 8, e57063Schuhmann, K.M.; Pfaller, C.K.; Conzelmann, K.K. The measles virus v protein binds to p65 (rela) to suppress nf-kappab activity. J. Virol. 2011, 85, 3162–3171Duque-Valencia, J.; Sarute, N.; Olarte-Castillo, X.A.; Ruiz-Saenz, J. Evolution and interspecies transmission of canine distemper virus-an outlook of the diverse evolutionary landscapes of a multi-host virus. Viruses 2019, 11, 582.Martella, V.; Bianchi, A.; Bertoletti, I.; Pedrotti, L.; Gugiatti, A.; Catella, A.; Cordioli, P.; Lucente, M.S.; Elia, G.; Buonavoglia, C. Canine distemper epizootic among red foxes, Italy, 2009. Emerg. Infect. Dis. 2010, 16, 2007.Espinal, M.A.; Diaz, F.J.; Ruiz-Saenz, J. Phylogenetic evidence of a new canine distemper virus lineage among domestic dogs in Colombia, South America. Vet. Microbiol. 2014, 172, 168–176.Pope, J.P.; Miller, D.L.; Riley, M.C.; Anis, E.; Wilkes, R.P. Characterization of a novel canine distemper virus causing disease in wildlife. J. Vet. Diagn. Investig. 2016, 28, 506–513PhylogenomicsReemergingLineages co-circulationGenomeCDVPhylogenomic analysis of two co-circulating canine distemper virus lineages in ColombiaArtículos Científicoshttp://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAtribución – No comercial – Compartir igualinfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2PublicationLICENSElicense.txtlicense.txttext/plain; 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