Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression
- Autores:
-
León Gabriel Gómez-Archila
Martina Palomino-Schätzlein
Wildeman Zapata-Builes
Maria T. Rugeles
Elkin Galeano
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2023
- Institución:
- Universidad Cooperativa de Colombia
- Repositorio:
- Repositorio UCC
- Idioma:
- eng
- OAI Identifier:
- oai:repository.ucc.edu.co:20.500.12494/57153
- Acceso en línea:
- https://hdl.handle.net/20.500.12494/57153
- Palabra clave:
- NMR
metabolomics
HIV-1
biomarkers
pathways
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-nd/4.0/
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dc.title.none.fl_str_mv |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
title |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
spellingShingle |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression NMR metabolomics HIV-1 biomarkers pathways |
title_short |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
title_full |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
title_fullStr |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
title_full_unstemmed |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
title_sort |
Plasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progression |
dc.creator.fl_str_mv |
León Gabriel Gómez-Archila Martina Palomino-Schätzlein Wildeman Zapata-Builes Maria T. Rugeles Elkin Galeano |
dc.contributor.author.none.fl_str_mv |
León Gabriel Gómez-Archila Martina Palomino-Schätzlein Wildeman Zapata-Builes Maria T. Rugeles Elkin Galeano |
dc.contributor.corporatename.none.fl_str_mv |
Universidad Cooperativa de Colombia Universidad de Antioquia |
dc.contributor.researchgroup.none.fl_str_mv |
INFETTARE |
dc.subject.proposal.none.fl_str_mv |
NMR metabolomics HIV-1 biomarkers pathways |
topic |
NMR metabolomics HIV-1 biomarkers pathways |
publishDate |
2023 |
dc.date.issued.none.fl_str_mv |
2023-06-29 |
dc.date.accessioned.none.fl_str_mv |
2024-09-27T18:24:14Z |
dc.date.available.none.fl_str_mv |
2024-09-27T18:24:14Z |
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Artículo de revista |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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2296-889X |
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https://hdl.handle.net/20.500.12494/57153 |
dc.identifier.doi.none.fl_str_mv |
10.3389/fmolb.2023.1204273 |
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2296-889X |
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eng |
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eng |
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17 |
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1204273 |
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01 |
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10 |
dc.relation.ispartofjournal.none.fl_str_mv |
Front. Mol. Biosci. |
dc.relation.references.none.fl_str_mv |
Aguilar-Jiménez, W., Zapata, W., Caruz, A., and Rugeles, M. T. (2013). High transcript levels of vitamin D receptor are correlated with higher mRNA expression of human beta defensins and IL-10 in mucosa of HIV-1-Exposed seronegative individuals. PLoS One [Internet 8 (12), e82717. Available from. doi:10.1371/journal. pone.0082717 Aldunate, M., Tyssen, D., Johnson, A., Zakir, T., Sonza, S., Moench, T., et al. (2013). Vaginal concentrations of lactic acid potently inactivate HIV. J. Antimicrob. Chemother. [Internet] 68 (9), 2015–2025. –25. Available from. doi:10.1093/jac/dkt156 Alves, C. R. R., Ferreira, J. C., de Siqueira-Filho, M. A., Carvalho, C. R., Lancha, A. H., and Gualano, B. Creatine-induced glucose uptake in type 2 diabetes: A role for AMPK- α? Amino acids Amino Acids, [Internet]. 2012;43(4):1803–1807. doi:10.1007/s00726- 012-1246-6 Arnold, K. B., Burgener, A., Birse, K., Romas, L., Dunphy, L. J., Shahabi, K., et al. (2016). Increased levels of inflammatory cytokines in the female reproductive tract are associated with altered expression of proteases, mucosal barrier proteins, and an influx of HIV-susceptible target cells. Mucosal Immunol. 9 (1), 194–205. doi:10.1038/mi. 2015.51 Baker, B. M., Block, B. L., Rothchild, A. C., and Walker, B. D. (2009). Elite control of HIV infection: implications for vaccine design. Expert Opin. Biol. Ther. 9 (1), 55–69. doi:10.1517/14712590802571928 Balmer, M. L.,Ma, E. H., Bantug, G. R., Grählert, J., Pfister, S., Glatter, T., et al. (2016). Memory CD8(+) T cells require increased concentrations of acetate induced by stress for optimal function. Immunity 44 (6), 1312–1324. doi:10.1016/j.immuni.2016.03.016 Barré-Sinoussi, F., Chermann, J. C., Rey, F., Nugeyre, M. T., Chamaret, S., Gruest, J., et al. (1983). Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS). Science 220 (4599), 868–871. doi:10.1126/ science.6189183 Behl, C., Widmann, M., Trapp, T., and Holsboer, F. (1995). 17-beta estradiol protects neurons from oxidative stress-induced cell death in vitro. Biochem. Biophys. Res. Commun. 216 (2), 473–482. doi:10.1006/bbrc.1995.2647 Bertini, I., Cacciatore, S., Jensen, B. V., Schou, J. V., Johansen, J. S., Kruhøffer,M., et al. (2012). Metabolomic NMR fingerprinting to identify and predict survival of patients with metastatic colorectal cancer. Cancer Res. 72 (1), 356–364. Available at:. doi:10. 1158/0008-5472.CAN-11-1543 Bertran-Cobo, C., Wedderburn, C. J., Robertson, F. C., Subramoney, S., Narr, K. L., Joshi, S. H., et al. (2022), A neurometabolic pattern of elevated myo-inositol in children who are HIV-exposed and uninfected: A South African birth cohort study Front. Immunol, [Internet]. Vol. 13, 800273, doi:10.3389/fimmu.2022.800273 Bose, S., Ramesh, V., and Locasale, J. W. Acetate metabolism in physiology, cancer, and beyond. Trends Cell Biol. [Internet]. 2019;29(9):695–703. doi:10.1016/j.tcb.2019. 05.005 Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., et al. (2008). Identification of host proteins required for HIV infection through a functional genomic screen. Science 319 (5865), 921–926. doi:10.1126/science.1152725 Brenchley, J. M., Price, D. A., and Douek, D. C. (2006). HIV disease: Fallout from a mucosal catastrophe? Nat. Immunol. 7 (3), 235–239. doi:10.1038/ni1316 Brennan, E., Kantharidis, P., Cooper, M. E., and Godson, C. (2021). Pro-resolving lipid mediators: Regulators of inflammation, metabolism and kidney function. Nat. Rev. Nephrol. [Internet] 17 (11), 725–739. Available from. doi:10.1038/s41581-021-00454-y Cao, Y., Qin, L., Zhang, L., Safrit, J., and Ho, D. D. (1995). Virologic and immunologic characterization of long-term survivors of human immunodeficiency virus type 1 infection. N. Engl. J. Med. 332 (4), 201–208. doi:10.1056/ NEJM199501263320401 Cassol, E., Misra, V., Holman, A., Kamat, A., Morgello, S., and Gabuzda, D. (2013). Plasma metabolomics identifies lipid abnormalities linked to markers of inflammation, microbial translocation, and hepatic function in HIV patients receiving protease inhibitors. BMC Infect. Dis. 13, 203. doi:10.1186/1471-2334-13-203 Chang, L., Lee, P. L., Yiannoutsos, C. T., Ernst, T., Marra, C. M., Richards, T., et al. (2004). A multicenter in vivo proton-MRS study of HIV-associated dementia and its relationship to age. Neuroimage 23 (4), 1336–1347. doi:10.1016/j.neuroimage.2004. 07.067 Che, X., He, F., Deng, Y., Xu, S., Fan, X., Gu, P., et al. (2014). HIV-1 Tat-mediated apoptosis in human blood-retinal barrier-associated cells. PLoS One 9 (4), e95420. doi:10.1371/journal.pone.0095420 Cheng, D-C., Zhong, G-C., Su, J-X., Liu, Y-H., Li, Y., Wang, J-Y., et al. (2010). A sensitive HIV-1 envelope induced fusion assay identifies fusion enhancement of thrombin. Biochem. Biophys. Res. Commun. 391 (4), 1780–1784. doi:10.1016/j.bbrc. 2009.12.155 Cohen, R. A., Harezlak, J., Gongvatana, A., Buchthal, S., Schifitto, G., Clark, U., et al. (2010). Cerebral metabolite abnormalities in human immunodeficiency virus are associated with cortical and subcortical volumes. J. Neurovirol 16 (6), 435–444. doi:10.3109/13550284.2010.520817 |
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Grupo Infettare, Facultad de Medicina, Universidad Cooperativa de Colombia, Medellín, Colombia. |
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León Gabriel Gómez-ArchilaMartina Palomino-SchätzleinWildeman Zapata-BuilesMaria T. RugelesElkin GaleanoUniversidad Cooperativa de ColombiaUniversidad de AntioquiaINFETTARE2024-09-27T18:24:14Z2024-09-27T18:24:14Z2023-06-292296-889Xhttps://hdl.handle.net/20.500.12494/5715310.3389/fmolb.2023.12042732296-889Xapplication/pdfengGrupo Infettare, Facultad de Medicina, Universidad Cooperativa de Colombia, Medellín, Colombia.Externohttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://purl.org/coar/access_right/c_abf2https://www.frontiersin.org/journals/molecular-biosciences/articles/10.3389/fmolb.2023.1204273/fullPlasma metabolomics by nuclear magnetic resonance reveals biomarkers and metabolic pathways associated with the control of HIV-1 infection/ progressionArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85Textinfo:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/publishedVersion1712042730110Front. Mol. Biosci.Aguilar-Jiménez, W., Zapata, W., Caruz, A., and Rugeles, M. T. (2013). High transcript levels of vitamin D receptor are correlated with higher mRNA expression of human beta defensins and IL-10 in mucosa of HIV-1-Exposed seronegative individuals. PLoS One [Internet 8 (12), e82717. Available from. doi:10.1371/journal. pone.0082717Aldunate, M., Tyssen, D., Johnson, A., Zakir, T., Sonza, S., Moench, T., et al. (2013). Vaginal concentrations of lactic acid potently inactivate HIV. J. Antimicrob. Chemother. [Internet] 68 (9), 2015–2025. –25. Available from. doi:10.1093/jac/dkt156Alves, C. R. R., Ferreira, J. C., de Siqueira-Filho, M. A., Carvalho, C. R., Lancha, A. H., and Gualano, B. Creatine-induced glucose uptake in type 2 diabetes: A role for AMPK- α? Amino acids Amino Acids, [Internet]. 2012;43(4):1803–1807. doi:10.1007/s00726- 012-1246-6Arnold, K. B., Burgener, A., Birse, K., Romas, L., Dunphy, L. J., Shahabi, K., et al. (2016). Increased levels of inflammatory cytokines in the female reproductive tract are associated with altered expression of proteases, mucosal barrier proteins, and an influx of HIV-susceptible target cells. Mucosal Immunol. 9 (1), 194–205. doi:10.1038/mi. 2015.51Baker, B. M., Block, B. L., Rothchild, A. C., and Walker, B. D. (2009). Elite control of HIV infection: implications for vaccine design. Expert Opin. Biol. Ther. 9 (1), 55–69. doi:10.1517/14712590802571928Balmer, M. L.,Ma, E. H., Bantug, G. R., Grählert, J., Pfister, S., Glatter, T., et al. (2016). Memory CD8(+) T cells require increased concentrations of acetate induced by stress for optimal function. Immunity 44 (6), 1312–1324. doi:10.1016/j.immuni.2016.03.016Barré-Sinoussi, F., Chermann, J. C., Rey, F., Nugeyre, M. T., Chamaret, S., Gruest, J., et al. (1983). Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS). Science 220 (4599), 868–871. doi:10.1126/ science.6189183Behl, C., Widmann, M., Trapp, T., and Holsboer, F. (1995). 17-beta estradiol protects neurons from oxidative stress-induced cell death in vitro. Biochem. Biophys. Res. Commun. 216 (2), 473–482. doi:10.1006/bbrc.1995.2647Bertini, I., Cacciatore, S., Jensen, B. V., Schou, J. V., Johansen, J. S., Kruhøffer,M., et al. (2012). Metabolomic NMR fingerprinting to identify and predict survival of patients with metastatic colorectal cancer. Cancer Res. 72 (1), 356–364. Available at:. doi:10. 1158/0008-5472.CAN-11-1543Bertran-Cobo, C., Wedderburn, C. J., Robertson, F. C., Subramoney, S., Narr, K. L., Joshi, S. H., et al. (2022), A neurometabolic pattern of elevated myo-inositol in children who are HIV-exposed and uninfected: A South African birth cohort study Front. Immunol, [Internet]. Vol. 13, 800273, doi:10.3389/fimmu.2022.800273Bose, S., Ramesh, V., and Locasale, J. W. Acetate metabolism in physiology, cancer, and beyond. Trends Cell Biol. [Internet]. 2019;29(9):695–703. doi:10.1016/j.tcb.2019. 05.005Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., et al. (2008). Identification of host proteins required for HIV infection through a functional genomic screen. Science 319 (5865), 921–926. doi:10.1126/science.1152725Brenchley, J. M., Price, D. A., and Douek, D. C. (2006). HIV disease: Fallout from a mucosal catastrophe? Nat. Immunol. 7 (3), 235–239. doi:10.1038/ni1316Brennan, E., Kantharidis, P., Cooper, M. E., and Godson, C. (2021). Pro-resolving lipid mediators: Regulators of inflammation, metabolism and kidney function. Nat. Rev. Nephrol. [Internet] 17 (11), 725–739. Available from. doi:10.1038/s41581-021-00454-yCao, Y., Qin, L., Zhang, L., Safrit, J., and Ho, D. D. (1995). Virologic and immunologic characterization of long-term survivors of human immunodeficiency virus type 1 infection. N. Engl. J. Med. 332 (4), 201–208. doi:10.1056/ NEJM199501263320401Cassol, E., Misra, V., Holman, A., Kamat, A., Morgello, S., and Gabuzda, D. (2013). Plasma metabolomics identifies lipid abnormalities linked to markers of inflammation, microbial translocation, and hepatic function in HIV patients receiving protease inhibitors. BMC Infect. Dis. 13, 203. doi:10.1186/1471-2334-13-203Chang, L., Lee, P. L., Yiannoutsos, C. T., Ernst, T., Marra, C. M., Richards, T., et al. (2004). A multicenter in vivo proton-MRS study of HIV-associated dementia and its relationship to age. Neuroimage 23 (4), 1336–1347. doi:10.1016/j.neuroimage.2004. 07.067Che, X., He, F., Deng, Y., Xu, S., Fan, X., Gu, P., et al. (2014). HIV-1 Tat-mediated apoptosis in human blood-retinal barrier-associated cells. PLoS One 9 (4), e95420. doi:10.1371/journal.pone.0095420Cheng, D-C., Zhong, G-C., Su, J-X., Liu, Y-H., Li, Y., Wang, J-Y., et al. (2010). A sensitive HIV-1 envelope induced fusion assay identifies fusion enhancement of thrombin. Biochem. Biophys. Res. Commun. 391 (4), 1780–1784. doi:10.1016/j.bbrc. 2009.12.155Cohen, R. A., Harezlak, J., Gongvatana, A., Buchthal, S., Schifitto, G., Clark, U., et al. (2010). Cerebral metabolite abnormalities in human immunodeficiency virus are associated with cortical and subcortical volumes. J. 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