Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach
During the last two decades, the world has witnessed the emergence and re-emergence of arthropod-borne viruses, better known as arboviruses. The close contact between sylvatic, rural and peri-urban vector species and humans has been mainly determined by the environment-modifying human activity. The...
- Autores:
-
Laiton Donato, Katherine
Guzmán Cardozo, Camila
Peláez Carvajal, Dioselina
Ajami, Nadim J.
Navas, Maria Cristina
Parra Henao, Gabriel
Usme Ciro, José Aldemar
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2023
- Institución:
- Universidad Cooperativa de Colombia
- Repositorio:
- Repositorio UCC
- Idioma:
- eng
- OAI Identifier:
- oai:repository.ucc.edu.co:20.500.12494/55529
- Acceso en línea:
- https://hdl.handle.net/20.500.12494/55529
- Palabra clave:
- 610 - Medicina y salud
Arbovirus
Emergence
Enzootic cycle
Metagenomics
Next-generation sequencing
One Health
Urban cycle
Virus discovery
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-nd/4.0/
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Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| title |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| spellingShingle |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach 610 - Medicina y salud Arbovirus Emergence Enzootic cycle Metagenomics Next-generation sequencing One Health Urban cycle Virus discovery |
| title_short |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| title_full |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| title_fullStr |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| title_full_unstemmed |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| title_sort |
Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach |
| dc.creator.fl_str_mv |
Laiton Donato, Katherine Guzmán Cardozo, Camila Peláez Carvajal, Dioselina Ajami, Nadim J. Navas, Maria Cristina Parra Henao, Gabriel Usme Ciro, José Aldemar |
| dc.contributor.author.none.fl_str_mv |
Laiton Donato, Katherine Guzmán Cardozo, Camila Peláez Carvajal, Dioselina Ajami, Nadim J. Navas, Maria Cristina Parra Henao, Gabriel Usme Ciro, José Aldemar |
| dc.contributor.researchgroup.none.fl_str_mv |
CIST-Centro de Investigación en Salud para el Trópico |
| dc.subject.ddc.none.fl_str_mv |
610 - Medicina y salud |
| topic |
610 - Medicina y salud Arbovirus Emergence Enzootic cycle Metagenomics Next-generation sequencing One Health Urban cycle Virus discovery |
| dc.subject.proposal.none.fl_str_mv |
Arbovirus Emergence Enzootic cycle Metagenomics Next-generation sequencing One Health Urban cycle Virus discovery |
| description |
During the last two decades, the world has witnessed the emergence and re-emergence of arthropod-borne viruses, better known as arboviruses. The close contact between sylvatic, rural and peri-urban vector species and humans has been mainly determined by the environment-modifying human activity. The resulting interactions have led to multiple dead-end host infections and have allowed sylvatic arboviruses to eventually adapt to new vectors and hosts, contributing to the establishment of urban transmission cycles of some viruses with enormous epidemiologic impact. The metagenomic next-generation sequencing (NGS) approach has allowed obtaining unbiased sequence information of millions of DNA and RNA molecules from clinical and environmental samples. Robust bioinformatics tools have enabled the assembly of individual sequence reads into contigs and scaffolds partially or completely representing the genomes of the microorganisms and viruses being present in biological samples of clinical relevance. In this review, we describe the different ecological scenarios for the emergence of viral diseases, the virus adaptation process required for the establishment of a new transmission cycle and the usefulness of NGS and computational methods for the discovery and routine genomic surveillance of mosquito-borne viruses in their ecosystems. |
| publishDate |
2023 |
| dc.date.issued.none.fl_str_mv |
2023-02-09 |
| dc.date.accessioned.none.fl_str_mv |
2024-05-06T23:54:10Z |
| dc.date.available.none.fl_str_mv |
2024-05-06T23:54:10Z |
| dc.type.none.fl_str_mv |
Artículo |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.coar.none.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
| dc.type.coarversion.none.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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info:eu-repo/semantics/article |
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info:eu-repo/semantics/publishedVersion |
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http://purl.org/coar/resource_type/c_6501 |
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publishedVersion |
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Laiton-Donato, K., Guzmán Cardozo, C., Peláez Carvajal. D, Ajami, N., Navas, M.C., Parra Henao, G., & Usme Ciro J.A. (2023). Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach. J Trop Ecol 39: E13. doi:10.1017/S0266467423000019.https://hdl.handle.net/20.500.12494/55529 |
| dc.identifier.issn.none.fl_str_mv |
0266-4674 |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12494/55529 |
| dc.identifier.doi.none.fl_str_mv |
doi.org/10.1017/S0266467423000019 |
| dc.identifier.eissn.none.fl_str_mv |
1469-7831 |
| identifier_str_mv |
Laiton-Donato, K., Guzmán Cardozo, C., Peláez Carvajal. D, Ajami, N., Navas, M.C., Parra Henao, G., & Usme Ciro J.A. (2023). Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach. J Trop Ecol 39: E13. doi:10.1017/S0266467423000019.https://hdl.handle.net/20.500.12494/55529 0266-4674 doi.org/10.1017/S0266467423000019 1469-7831 |
| url |
https://hdl.handle.net/20.500.12494/55529 |
| dc.language.iso.none.fl_str_mv |
eng |
| language |
eng |
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E13 |
| dc.relation.citationendpage.none.fl_str_mv |
11 páginas |
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1 |
| dc.relation.citationvolume.none.fl_str_mv |
39 |
| dc.relation.ispartofjournal.none.fl_str_mv |
Journal of Tropical Ecology |
| dc.relation.references.none.fl_str_mv |
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Laiton Donato, KatherineGuzmán Cardozo, CamilaPeláez Carvajal, DioselinaAjami, Nadim J. Navas, Maria CristinaParra Henao, GabrielUsme Ciro, José AldemarCIST-Centro de Investigación en Salud para el Trópico2024-05-06T23:54:10Z2024-05-06T23:54:10Z2023-02-09Laiton-Donato, K., Guzmán Cardozo, C., Peláez Carvajal. D, Ajami, N., Navas, M.C., Parra Henao, G., & Usme Ciro J.A. (2023). Evolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approach. J Trop Ecol 39: E13. doi:10.1017/S0266467423000019.https://hdl.handle.net/20.500.12494/555290266-4674https://hdl.handle.net/20.500.12494/55529doi.org/10.1017/S02664674230000191469-7831During the last two decades, the world has witnessed the emergence and re-emergence of arthropod-borne viruses, better known as arboviruses. The close contact between sylvatic, rural and peri-urban vector species and humans has been mainly determined by the environment-modifying human activity. The resulting interactions have led to multiple dead-end host infections and have allowed sylvatic arboviruses to eventually adapt to new vectors and hosts, contributing to the establishment of urban transmission cycles of some viruses with enormous epidemiologic impact. The metagenomic next-generation sequencing (NGS) approach has allowed obtaining unbiased sequence information of millions of DNA and RNA molecules from clinical and environmental samples. Robust bioinformatics tools have enabled the assembly of individual sequence reads into contigs and scaffolds partially or completely representing the genomes of the microorganisms and viruses being present in biological samples of clinical relevance. In this review, we describe the different ecological scenarios for the emergence of viral diseases, the virus adaptation process required for the establishment of a new transmission cycle and the usefulness of NGS and computational methods for the discovery and routine genomic surveillance of mosquito-borne viruses in their ecosystems.Minciencias11 páginasapplication/pdfengUniversidad Cooperativa de Colombia, Facultad de Ciencias de la Salud, Medicina, Santa MartaExternohttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://purl.org/coar/access_right/c_abf2610 - Medicina y saludArbovirusEmergenceEnzootic cycleMetagenomicsNext-generation sequencingOne HealthUrban cycleVirus discoveryEvolution and emergence of mosquito-borne viruses of medical importance: Towards a routine metagenomic surveillance approachArtículohttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionE1311 páginas139Journal of Tropical EcologyAjami, NJ, Wong, MC, Ross, MC, Lloyd, RE and Petrosino, JF (2018) Maximal viral information recovery from sequence data using VirMAP. 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Cell 172, 1168–1172. https://doi.org/10.1016/j.cell. 2018.02.043PublicationMinciencias 210477757671Expedición virológica en ecosistemas representativos de Colombia: selva húmeda tropical de la Sierra Nevada de Santa MartaORIGINAL2023_Articulo.pdf2023_Articulo.pdfArtículoapplication/pdf1565984https://repository.ucc.edu.co/bitstreams/a2bf8a05-c98c-4ce8-8931-56b516478f6a/download3cdb6a96f696a0331f9acb807008ed35MD512023_Licencia_Uso.pdf2023_Licencia_Uso.pdfLicencia de usoapplication/pdf198927https://repository.ucc.edu.co/bitstreams/8347303a-6c77-41df-830c-f81d9c8c5232/download2bb9eb2b7b7de511904633a5f80279e2MD55CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8805https://repository.ucc.edu.co/bitstreams/f1b3293e-526b-41ee-b613-842f64667f7c/download4460e5956bc1d1639be9ae6146a50347MD53LICENSElicense.txtlicense.txttext/plain; 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