Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia

The objective of this study was identify the frequency of Beta globin cluster’s haplotypes present in sickle cell anemia patients in Colombia, to establish the presence of non-African haplotypes in this population, to verify variations in the pattern of linkage disequilibrium in the Beta globin clus...

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Autores:
Fong Reales, Cristian Javier
Barreto G.
Tipo de recurso:
Article of journal
Fecha de publicación:
2018
Institución:
Universidad Cooperativa de Colombia
Repositorio:
Repositorio UCC
Idioma:
OAI Identifier:
oai:repository.ucc.edu.co:20.500.12494/42134
Acceso en línea:
https://doi.org/10.21897/rmvz.824
https://www.researchgate.net/publication/284196860
https://hdl.handle.net/20.500.12494/42134
Palabra clave:
Admixture
Beta globin
Haplotypes
Linkage disequilibrium
Rights
closedAccess
License
http://purl.org/coar/access_right/c_14cb
id COOPER2_21a4667ebe9832d38f83128cf86eeb24
oai_identifier_str oai:repository.ucc.edu.co:20.500.12494/42134
network_acronym_str COOPER2
network_name_str Repositorio UCC
repository_id_str
spelling Fong Reales, Cristian JavierBarreto G.2021-12-16T22:16:03Z2021-12-16T22:16:03Z2018https://doi.org/10.21897/rmvz.824https://www.researchgate.net/publication/2841968600120548Xhttps://hdl.handle.net/20.500.12494/42134Fong C,Barreto G. Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia. Acta Biológica Colombiana. 2018. 23. (3):p. 253-262. .The objective of this study was identify the frequency of Beta globin cluster’s haplotypes present in sickle cell anemia patients in Colombia, to establish the presence of non-African haplotypes in this population, to verify variations in the pattern of linkage disequilibrium in the Beta globin cluster. It was analyzed 83 individuals affected with sickle cell anemia, the haplotypes were formed using five restriction sites into Beta globin cluster. The haplotype frequency was calculated, as well as the linkage disequilibrium among restriction sites, the genetic similarity among Colombian population and other affected American population was determined. The haplotypes most frequent were Benin (35.1 %) and Bantu (26.5 %), both African. However, haplotypes present in American indigenous and European populations got frequency between two to ten percent, as well as haplotypes not reported in others population were observed in our population. The restriction sites showed low or null linkage disequilibrium. When compare with other populations, the Colombian population showed higher similarity with Venezuelan population where Benin and Bantu are predominant too. Our results showed that admixture has facilitated the move of sickle cell mutation to a non-African genetic context (Amerindian and European). Further, the admixture has also modified the pattern of linkage disequilibrium into the Beta globin cluster generating modifications that could have influence in association studies in this affected population. © 2018, Universidad Nacional de Colombia. All rights reserved.0000-0003-1864-2186cristian.fongr@campusucc.edu.co262-253Universidad Nacional de ColombiaAdmixtureBeta globinHaplotypesLinkage disequilibriumPresencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en ColombiaArtículohttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/publishedVersionActa Biológica Colombianainfo:eu-repo/semantics/closedAccesshttp://purl.org/coar/access_right/c_14cbPublication20.500.12494/42134oai:repository.ucc.edu.co:20.500.12494/421342024-08-20 16:22:24.055metadata.onlyhttps://repository.ucc.edu.coRepositorio Institucional Universidad Cooperativa de Colombiabdigital@metabiblioteca.com
dc.title.spa.fl_str_mv Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
title Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
spellingShingle Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
Admixture
Beta globin
Haplotypes
Linkage disequilibrium
title_short Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
title_full Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
title_fullStr Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
title_full_unstemmed Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
title_sort Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia
dc.creator.fl_str_mv Fong Reales, Cristian Javier
Barreto G.
dc.contributor.author.none.fl_str_mv Fong Reales, Cristian Javier
Barreto G.
dc.subject.spa.fl_str_mv Admixture
Beta globin
Haplotypes
Linkage disequilibrium
topic Admixture
Beta globin
Haplotypes
Linkage disequilibrium
description The objective of this study was identify the frequency of Beta globin cluster’s haplotypes present in sickle cell anemia patients in Colombia, to establish the presence of non-African haplotypes in this population, to verify variations in the pattern of linkage disequilibrium in the Beta globin cluster. It was analyzed 83 individuals affected with sickle cell anemia, the haplotypes were formed using five restriction sites into Beta globin cluster. The haplotype frequency was calculated, as well as the linkage disequilibrium among restriction sites, the genetic similarity among Colombian population and other affected American population was determined. The haplotypes most frequent were Benin (35.1 %) and Bantu (26.5 %), both African. However, haplotypes present in American indigenous and European populations got frequency between two to ten percent, as well as haplotypes not reported in others population were observed in our population. The restriction sites showed low or null linkage disequilibrium. When compare with other populations, the Colombian population showed higher similarity with Venezuelan population where Benin and Bantu are predominant too. Our results showed that admixture has facilitated the move of sickle cell mutation to a non-African genetic context (Amerindian and European). Further, the admixture has also modified the pattern of linkage disequilibrium into the Beta globin cluster generating modifications that could have influence in association studies in this affected population. © 2018, Universidad Nacional de Colombia. All rights reserved.
publishDate 2018
dc.date.issued.none.fl_str_mv 2018
dc.date.accessioned.none.fl_str_mv 2021-12-16T22:16:03Z
dc.date.available.none.fl_str_mv 2021-12-16T22:16:03Z
dc.type.none.fl_str_mv Artículo
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.coar.none.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.coarversion.none.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.none.fl_str_mv info:eu-repo/semantics/article
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dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_6501
status_str publishedVersion
dc.identifier.none.fl_str_mv https://doi.org/10.21897/rmvz.824
https://www.researchgate.net/publication/284196860
dc.identifier.issn.spa.fl_str_mv 0120548X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12494/42134
dc.identifier.bibliographicCitation.spa.fl_str_mv Fong C,Barreto G. Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia. Acta Biológica Colombiana. 2018. 23. (3):p. 253-262. .
url https://doi.org/10.21897/rmvz.824
https://www.researchgate.net/publication/284196860
https://hdl.handle.net/20.500.12494/42134
identifier_str_mv 0120548X
Fong C,Barreto G. Presencia de haplotipos no africanos incrementa la diversidad genética en pacientes con anemia falciforme en Colombia. Acta Biológica Colombiana. 2018. 23. (3):p. 253-262. .
dc.relation.ispartofjournal.spa.fl_str_mv Acta Biológica Colombiana
dc.rights.accessrights.none.fl_str_mv info:eu-repo/semantics/closedAccess
dc.rights.coar.none.fl_str_mv http://purl.org/coar/access_right/c_14cb
eu_rights_str_mv closedAccess
rights_invalid_str_mv http://purl.org/coar/access_right/c_14cb
dc.format.extent.spa.fl_str_mv 262-253
dc.publisher.spa.fl_str_mv Universidad Nacional de Colombia
institution Universidad Cooperativa de Colombia
repository.name.fl_str_mv Repositorio Institucional Universidad Cooperativa de Colombia
repository.mail.fl_str_mv bdigital@metabiblioteca.com
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